Gene detail

Detailed information of evm.model.HiC_scaffold_119.2 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_119:22119...39126
NR annotation: XP_047132278.1, exportin-1-like isoform X2 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_119.2

ATGAATATTGTTGCCGTGAATGGCTTGGAAAGCCAAGCCCAAAAATTACTTGATTTTAAGGATAAACTCGATGTCAGCCTTTTGGACAAGGTTGTGGCATCACTCTACACTGGAGAGGGGCAACAGcaTCAAGTTGCCAAAAAGGTATTACAAGACCTTAAAGATCATCCAGATTCATGGACCAGAGTGGATTCAATCTTGGAGACCTCATCAAACCAGCAGACAAAAttcTTTGCACTGCAGATTCTTGAAACTGTGATAAAAACACgatggaaaattttgccacAAGAGCAAAGAGAAGGAATAAAAAAGTATGCCGTTGGACTTGTTATCAAAATCTCTTCAGACAAAGCTACTCTTGAGAGCGAGAAGACATACCTCAATAAGCTAAATGTAATACTTGTACAGATTGTCAAGAGAGAATGGCCAAAGAATTGGCCAACATTCATCAGTGATATTGTTGGGGCAAGTCAAACCAATGAATCACTTTGTCAAAATAATATGGCAATACTTCGTTTACTCAGTGAGGAGGTGTTTGATTTCTCAAGTGGACAACTCACGCAAACTAAAGCAAAACATCTAAAAGACAGCATGTGTCAAGAATTCTCCTTGATTTTTACACTCTGTCAGTTTGTCATGgaaaattcaATGAACGTGTCCTTGGTTGAATCCACATTGCAGACTTTGCTGAAGTTTTTGAACTGGATACCACTTGGATATATTTTTGAAACCAAGCTGATTAGCACATTGATTTACAAATTTCTGAATGTTCCAATGTTCCGAAATGTCACTTTGAAATGTCTAACCGAAATTGCTGGTATCTCAAACATTCAATACAATGAACAATTCGTTCTTTTATACACATTGACAAAAGCTCAGTTAACGCAGATGCTGCCTGTCGATACTAACCTGAAACAAGCATATGTGAATGGTACTGATGATGAACAAAAGTTCATTCAAAATTTGGCAATGTTTCTCAGTATTTTTCTGAAGGAGCATGGACACTTGCTAGAAAAGAAGGCTGATCTAAAAAGTGCTCTTTTTGATGGTCTTCAATATCTTGTTCTGATATCAGAAGTTGAAGACAcagaaatattcaaaatatgTTTGGAATACTGGAGTGCTTTAGCGTCAGATTTGTACAGAGAAAGTCCATTTTCAACACCATCACAGATACTTGGTTCACCGTCATCATTAAATGTACCCCCTCGACGACAAATATACCTAGAAATCCTATCAAAGGTACGACTGATTATGATATCACGGATGGCAAAGCCTGAAGAGGTTTTAGTTGTGGAGAATGAACAAGGAGAAGTTGTTCGTGAATTTATGAAAGACACTGATGCTATCAATATGTACAAAACCATGAGAGAAACCCTCGTATACTTGACTCATTTGGATTACCAAGACACCGAAAGAATCATGACAGAAAAACTGAGAAATCAAGTTAATGGAACCGAGTGGTCATGGAAGAACCTCAACACGCTTTGTTGGGCCATTGGCTCAATCAGTGGTGCTATgcatgaagaagatgaaaagagaTTTCTCGTCATCTTCATCAAGGATCTGCTTGGTCTGTGTGAAGTAAAACGAGGAAAAGACAACAAGGCCATAATTGCATCAAATATTATGTACATAGTTGGACAGTACCCACGTTTTCTAAGGGCCCACTGGAAATTTCTGAAAACTGTTGTAAATAAGCTTTTCGAGTTTATGCACGAAACACATGACGGAGTTCAAGACATGGCTTGCGACACATTCATTAAAATTGCTCAAAGGTGCAGAAGGCATTTTGTACAGGTTCAAGTTGGTGAGGTAATGCCTTTcattgaagaaattttgaacAATATCAATACAATTATATGTGACCTTCAGCCACAGCAGGTCCATGTCTTTTATGAAGCAGTTGGCTGCATGATTAGTGCTCAGACGGATACCGTTGTGACAGAAAGATTGATTGAGAAGTGCATGCAGCTGCCAAATCAAGTATGGGATGGTGTTATAGCCTCAGCAACAAAAAATATCGATGTTCTCAAAGAACTTGAAACAGTGAAGCAGTTAGCTAATATACTGAAAACGAATGTCAGTGCTTGCAAGTCTGTTGGTCATTTGTTTGTCAATCAACTCGGTCGAATATATCTTGATATGGTCAATGTTTACAAAGTTTTAAGCGAGAATATTTCATCTGCTGTTGCACAACATGGGGAAAGTGTGACAAAACAACCGCTTATCCGTGCAATGAGAGGTGTCAAGAAAGACTCACTGAATTTGATCAATTGCTGGGTTAATAAATCAAATGATCCTAAATTGGTAAAAGATAACTTTATCCCGCCGTTGCTGACCACTGTGTTAGATGATTACAATAACAATGTGCCTCAAGGCAGAGAAGCAGAGGTCTTGAATACCATGGCAACAATTGTAAATAAACTAGAGTTGCATATAATCGACCAAATACCTCTTATCTTTGATGCTGTTTTCGAGTGTACATTGGAAATGATCAATAAGGACTTCCAAGAGTTTCCTGACCATCGGACAAATTTCTTTACGCTGTTGCAAGCTGTCAACCAGCATTGTTTCCCAGATAGAAGAATTGGCCATCCTTATCAAAGCAGGGCGACGCCTAAACGGAAAAAACCGCGCACAACGTTTTCGCGATCTCAGATCCAAGAACTGGAAGAACTGTTTACAGAGAAAAAATATTTGACGTCATCTGAAAGACAGAGAGTTGCATCTTATCTTCAGCTTACGGACTGTCAAGTAAAAACGTGGTTTCAGAACAGAAGGACAAAATGGAAAAGAGAGACGGATGAGGAAAAAGAGGAACAAAGACATGCTATGAGAAGGGCTATGATGTCTTTTCATAAAGAACGCATGATTCCTTTTCAGAATTGTCTGTAA

Transcript

evm.model.HiC_scaffold_119.2

Protein

Uniprot

Gene family

Uniprot term	Description
Q6P5F9	Exportin-1 OS=Mus musculus OX=10090 GN=Xpo1 PE=1 SV=1
Q80U96	Exportin-1 OS=Rattus norvegicus OX=10116 GN=Xpo1 PE=1 SV=1
O14980	Exportin-1 OS=Homo sapiens OX=9606 GN=XPO1 PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08389	Xpo1	Exportin 1-like protein	Repeat	Interproscan
PF03810	IBN_N	Importin-beta N-terminal domain	Repeat	Interproscan
PF18784	CRM1_repeat_2	CRM1 / Exportin repeat 2	Repeat	Interproscan
PF00046	Homeodomain	Homeodomain	Domain	Interproscan
PF08767	CRM1_C	CRM1 C terminal	Repeat	Interproscan
PF18777	CRM1_repeat	Chromosome region maintenance or exportin repeat	Repeat	Interproscan
PF18787	CRM1_repeat_3	CRM1 / Exportin repeat 3	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013598	Domain	Exportin-1/Importin-beta-like	Interproscan
IPR001494	Domain	Importin-beta, N-terminal domain	Interproscan
IPR001356	Domain	Homeobox domain	Interproscan
IPR041235	Repeat	Exportin-1, repeat 2	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR014877	Domain	Exportin-1, C-terminal	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR041123	Repeat	Chromosome region maintenance repeat	Interproscan
IPR045065	Family	Exportin-1/5	Interproscan
IPR040485	Repeat	Exportin-1, repeat 3	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11223	EXPORTIN 1/5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0031267	Molecular Function	small GTPase binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005049	Molecular Function	nuclear export signal receptor activity	Interproscan
GO:0000055	Biological Process	ribosomal large subunit export from nucleus	Interproscan
GO:0000056	Biological Process	ribosomal small subunit export from nucleus	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006611	Biological Process	protein export from nucleus	Interproscan