Gene detail

Detailed information of evm.model.HiC_scaffold_13.11 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_13:74949...88642
NR annotation: XP_020915042.2, protein YIPF5 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_13.11

ATGTCAAATACAGGGGATCAGCAAATCGACTTTTTTGACTCGGGTTATTCCTACAACTCCAATCAAGATAATGCAAGTTACAATTATCAAGATCAGGGTGGAAACTTTGGTGATTACTCAGGTTATGGTGGCTATGATCAAAGTTATAATGCTGCTCCTGGATTTGGAAGTCAAGGTCCCTCCATAATGACTCCACAACAACAAAATTATGGATTCAATAATGAAATGAAAGCTGATTCTAATAACTATACAAGCTTTGAAGATGAACCTCCGTTATTGGAAGAACTTGGAATAAATTTTGATCATATTACACAAAAGACAATGTCAGTTCTTCATCCTCTGCAGCAAACAGACCCAAATATCATGGATGATACAGATCTTGCTGGTCCGTTTGTATTCTGTATTGCATTTGGTGCATTTTTGTTGCTGTCCGGCAAAGTTCATGGCTTTGGCTACATATATGGAGTAGGTGTGCTTGGCTGTCTCTCGATGTATGCTGTCCTAAACTTCATGAGCATGACAGGGGTCTCGTTGAGTTGCGTCGTCAGTGTTCTTGGTTATTGCCTTCTTCCAATGGTTTTGCTGTCAGGAATATCAGTCGTCATAACGCTACAGGGGAGTCTTGGAACAGTTCTGACAACTTTGGCTGGTGGAGGTGAATTAACCTCAACATCTATTCCTGGATCTATAAGgttAACTGATAAGAAAGATTCTTCAGCTACTGGATTAGTTCATGTTGATTTTATCTATGAAAGTGTGAAGCAGAATGAGCTTCAAGATATTGAGAAATTTAGAGTCAGAGAAAAGGAGCCGCCAGGAAAGACGTCCAAATGTGGAGTGAAGAGTGGGAGAAGTGACTTTTCATGCAGTGAAGATCAAGCTATTGTTGATTATATAAGAAAGAATGCAAGAGAAACTGGTACAGGAAGCATCAAAGGAAACTATATTTGGAAAGAAATGGAAAAGAAaaagGTGACTAATCATACCTGGCAATCAATGAAGTGTAGATTCCTGAAACATCTTAATAACGCTGCACCGAAATTCAATTTTAATCCATTGCTGGTAGCAAATTACAAAGGTAAAAATGTCCCATATGCACAGATTGCAACTGGCAGTTCTAAAGCAAGCGCTACCAATGCAGTAGTAGTCAAGGATGGTGGCAGTAATGGTTATGCAAAATCAAGTTCGCTagctctttataagaaaccaagtaTTAGAAGCTCAGTACTGAGCAAGAAGTCTGCAGCTAATAAAGTCAAAATGCTAGTTCCAAGATATAATAAACTCCTGTTTTCTgcatattttgaaaagaaaagtgaTCCCGTTAACTCGTTTACACGCGTTGGCAAAGAGCCAGAAGTGGTTCTGGATCGGATCAGAACCGATCAACTGATCCAGTCTCtcttgtgtaaacggggtcGTGGAAATACTAAAGAAACTAATGCGTTGGTGGATGAGATTGAGAGCGATTCTGATGAGGAATCAAGAGAGGTATTCGTTCAACCGGCTTCAAAAAGACAAGATGCAAATAATCAGCGAAAAAGACAAAGATCGAGTCACACGAGTTCTAGCCTAACCGCAGCAAGTGACAACGAAGATTTTCCTTACAGAATGGCAAAATCTAGTAAAATATCAAAAAGAAATATAGACAATGATAATAGAATGTCTTGTTCGAGCAAAGCAGATAAACCGAGCACTTCTGAGCGAGTTAGCTGTAATGAGCGTACCAAAGAGACTTTATCTTGCAACATAGATTCAAGAAAAAACACGTTTGATACAGAGAGACAGAAGAATTTATCCAAAAGGAAAACATGGACTAAAGATTCAGATGAAATCGAGGCAGATCCAAAGCGAGAAAAGAGAGCTAATCTTGGCATGAAATTTAGTGAGCATAACAAACGTGCGTTGGATTTCATACAATCTGACAAGGGACTTGAAATGCTGAAAATCATCAAACTGAACTCAAAAATCAAAAACTTCATGCTAAGGTTTAGGCTGAATTTCATGCAAGCTTTCAAAATGATTTTCTTCTGCAACGGTGACTTAGAAGATGCTGCAAGCTGTATCCAGAATCAGAGAATGAGAAACGGTTCTTTACCCTGGAACTACGAAGATGACCAAATTCTTATGTTGGGTGAAAATATGAAGAATCGaacaaaaatcgaaaaattgatCAAGAATCGAGGCATCAAAGCTGTCAAAGAGCGATTGGCATTCCTCGGATCGAGCGGTACTGAGGCAGATACCTGCTTTGCTGTTTGTGAGGGAAATGGTGGCTGCAAGAATGTCAAATCTTCTGCGAAGAAAACGAGCCAAATTGGTTGTTACGGAGGATCGTGTGACATTGAATGCTTGAATTATAATAGTATGTGTTTCATAAGATGCAACAAGGGAAAATGCAATTTGAAATGCATGTCGGAGTATTGTGAAGTGCTTTGCAGTGGAGGAAGCTGCAATGTTAAGGGTGGATTACAGACCAAGTATATTCAGCTTAATTCTGGAGGCAATTCAACACTGATCTGTGCGAATGGCAGTAAATGCGGCAATGCTGCTTGCGATGCTAACAATAATTGTGTTTCCTACATGAAGAACCCTCTCAACGAACCTAATGCTGCTTATTCGATGCATCAAACGGCAGTCTGGATGGCATTTGTATCTTTTGTTGCTGCTTTGGTGCTGGCTTATTAA

Transcript

evm.model.HiC_scaffold_13.11

Protein

Uniprot

Uniprot term	Description
Q6P5I8	Protein YIPF5 OS=Danio rerio OX=7955 GN=yipf5 PE=2 SV=1
Q4R5M4	Protein YIPF5 OS=Macaca fascicularis OX=9541 GN=YIPF5 PE=2 SV=1
Q969M3	Protein YIPF5 OS=Homo sapiens OX=9606 GN=YIPF5 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08914	Myb_DNA-bind_2	Rap1 Myb domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045231	Family	Protein Yip1/4-like	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR015010	Domain	Rap1 Myb domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21236	GOLGI MEMBRANE PROTEIN YIP1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005802	Cellular Component	trans-Golgi network	Interproscan
GO:0006888	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0048280	Biological Process	vesicle fusion with Golgi apparatus	Interproscan