Gene detail

Detailed information of evm.model.HiC_scaffold_13.110 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_13:999514...1003430
NR annotation: XP_027046197.1, uncharacterized protein LOC113673928 [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_13.110

ATGCTTTTCCAGTACCTCGCCATTTTCGCTGTTCTGGCTTTTGGAGCTGACTCAATATGCCCGAAGTCTTGCCCGGTGAAGATGATCAGAGCTTGGCCTAACAGTGGCTACCATGCAAACGTTTCAGTCATAGCTCCTGATAACTTCAGAAATCAAAAACCCTTCAAAATCAGCATGTTCTTCGACATCGCACCTCAAAGAGTGGAGAATCTTTACATTAAAGGGGGAAGCATAAATATGGTAAATTCTCAAATACCTGGGAAAAGAATAACTCTGTACTTCAGACCAGATCGAAGGATTCGTAAAGGGTCAATTGTGGATATCGAATTCCTGGTAAGGCATTCGACAAAAACCCCACAGCTGAATGAAATTCGTTTCCGTAAAAAATCCGTCTGCTCGTCGACCTCTTGCCCAACTGACAAGAAAAGCACAGCCATGCCAGTGACAACACAGCCATCTCAAGCCTCAAAATGCGACAAAAAAGTTGCCAATAATGTTGAATTGGCTCCTGATCACATGAAAGTTCGACTGAATTTCACAGTTGTATCTGCAATGAATGGCTGGAAGCTTGAGATTCTGTTTGATAAGCCTATTTTGAGTCTTTCCAATTTCCCTGCCTTACTAACTGAAGAAAGAGCCATGCGCTATTTCGTTCTTGAAAATATGCCTCACAATCAAGATGTCCCTGTCGGATATTTTGGGTTTGACGTCTTGGCTCATTTTGATCGCAATTACATCTCTCCTCCGAAAATAACAATGCTGAAATTCGGATCCTTTGTCTGCAAGCTGAACGATAACGTAGCTGTACCGCCAACAACAATTGCACCGCCCAGCACGAGACCACAGCCCACCACCGAAAGGCCCACGACCAGCCCTCAAGAAGTAACAACTAATAGCCCTGTAACAACCCGGAAACCGGACGTGACGACTGAGGAGCCGGAAGTGACGAAGGAACCGTCTACTAGTCCTACTGATATCACAACATCTCCACCGGAAGTCACTACAGGAAGACCGGATATGACGACAAGGAAACCAACGACCATAAAGGTAACCACAGAAAAGCAAAAGACAACATCAAATCCATTGGCTTGCAAACCTGAGTTTAACTACGATAAAGTTTTGAAGCTGTCTCTTCTGTTTTACGAAGCTCAAAGATCTGGTAAACTCCCAGCATCAAATAGAATTCCATACAGGAAAGATTCAGCTGTTAATGATGGTAAAGATGTTGGCAAAGACCTCTCAGGGGGATATTATGACGCTGGTGACTTTGTTAAGTTTAATTTCCCAATGGCTTATACGATTACTGTGTTGTCATGGGGTGCAATTCAGTATGATGACGCTTACAGAGCTTCTGGTCAATATCAGAATATGTTGGATGCAATAAAGTGGGGAACAGATTATTTTATCAAATGTCACACCGCTAAGAATGAGCTGTATGGTCAGGTTGGTGACGGTCATGTTGATCATTCATCCTGGGGAAGACCAGAAGATATGACCATGAACAGACCATCTGCAAAGATAGATGAATCTAAACCAGGATCTGAGTTGGCTGGTGAAACTGCAGCAGCCCTGGCAGCCGCATCGATTGTATTCCGATCAGACACAGCATACTCACAGACTTTGCTGAGACATGCAAAGGAGTTGTTCGACTTTGCAGACAAATTCAGAGGCGTCTACAGTAATTCTATCCCCAATGCAGCCAATTTCTACAAAAGCTGGAGTGGTTATAATGACGAGCTCACTTGGGCAGCAGCTTGGTTGTACAAGGCTTCAAAAGAAGCAAAATATCTTTCAGCAGCTAAATCCTTCTACAATCAGTTTGGTATGTCTTCAAACCCTCAAGAATTCTCGTGGGATGATAAGAAAGCTGGTGTACAGGTACTGATGGCGCAAATCACATCTGAGAGCTCTTACAAGCAGAACGTAAAAACATTCTGCAATTCAATTTTGAACAAACAGAGAACACCAGCTGGACTGGTCTTCGTCAGTCAATGGGGAGCAAACAGGCATGCTGCAAATGTTGCATTCATATGCCTTCTTGCTGCTGATCTTGGCATCAGACAAGATGATTACCGATTATTTGCACGATCGCAAATTCACTACATGCTCGGTAAGCCGAATTCCCCACGCAGTTTCGTTGTTGGTTTTGGTAGGAATCCACCCCAGCGACCCCATCATAGATCGAGTTCCTGCCCCAATGCTCCTGACATTTGCGACTGGAATGACTACAACAGTGCTGCTCCCAACCCCCATGTATTGTACGGTGCACTTGTTGGGGGGCCTGATGCAAATGATAACTATTCGGATAATCGAAGTGATTACGTCAAAAATGAAGTTGCTTGCGATTATAATGCTGGGTTCCAGTCCGCTTTGGCTGCTTTGAAACATCTTCAACTCAATGGAAAATGCTGA

Transcript

evm.model.HiC_scaffold_13.110

Protein

Uniprot

Uniprot term	Description
P26221	Endoglucanase E-4 OS=Thermobifida fusca OX=2021 GN=celD PE=1 SV=2
Q5YLG1	Endoglucanase A OS=Bacillus pumilus OX=1408 GN=eglA PE=1 SV=1
P28622	Endoglucanase 4 OS=Bacillus sp. (strain KSM-522) OX=120046 PE=3 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00759	Glyco_hydro_9	Glycosyl hydrolase family 9	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008928	Homologous_superfamily	Six-hairpin glycosidase superfamily	Interproscan
IPR012341	Homologous_superfamily	Six-hairpin glycosidase-like superfamily	Interproscan
IPR001701	Domain	Glycoside hydrolase family 9	Interproscan
IPR033126	Active_site	Glycosyl hydrolases family 9, Asp/Glu active sites	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22298	ENDO-1,4-BETA-GLUCANASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01179	E3.2.1.4; endoglucanase	EC:3.2.1.4	Two-component system	ko02020	deepkoala