Gene detail

Detailed information of evm.model.HiC_scaffold_13.206 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_13:1982629...1985833
NR annotation: XP_047134695.1, ATP-dependent RNA helicase DDX24-like [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_13.206

ATGTCGGCAGGAAAGAAGCGTGCTGAGGAAAGACAGAAAAAGTctgaaaagacaagaaaattaGGTAAGAAATGGAAAAGCCTAAGTGTTCCAGAAGGAGAGATATTCAATTTTGAAGAAGATGGTCTGATATCATTTGAAGAATTAACAGAGTATACCGTCAATGAGGGGAGAATTCTTGTCGGCAAAGTCAAAGGTGATGAGCCTAGGCCAATTGAACCTGAAGTCAAAAAGGCCAAACTTGGTCTGGAAGATGGCTATCTATCTTCAAGTGCACAGGTTCCtgtgaagaaaaagaaagcaaagaaaaagaaagccaAATCGACAGCCAAAGTTAAGACAGAGAAAGTACTGCCTGACATTCCTCAAGAATCAAATTCAGCTCCAGAAATACAAGACACAGCAGAGGAAATAAGAGTTGAAGGTGATGGAAAAGGCAGcaagaatgaaaataaaaacctccGTAAAGATTCAACACAGCAGCTATCAGATGAAGAATCCAAGCCTCAAGTCAAATGTGATATGAGCGAATGGAATGGCCTTGGTCTTCCTGATGCAATCCTTGCTGCATTGAGTGACAAAAGCTTCACTCACCCAACACCAATCCAAGCTGAAACATTGCCTGTAGCTATTTTCCATCATCAGGATATAATTGGAGCTGCTGAGACAGGTTCTGGCAAGACTCTTGCCTTTACTCTGCCTATTCTGACACACATCTTGGATTATAAAAACACAAGAGAAGCAAAAAAGTTAGCAGATGATTCTAAAGATAAAAACATAAAGCCACTTTTTGCTGTAATTCTAACACCAACCAGAGAACTTGCAATGCAGATATACAAACATGTTAAAGATATGGCTAAATATACAACAATTAAATGTGCAGTAATTGTTGGTGGTCTTTCTGAGCAAAAACAAGAACGAATTCTCTCCAAATGTCCAGAAATTGTGATTGGGACACCCGGACGTCTCTTAAACCTTATTAAGGATGAAAAACCTCATCTAAAGAAACTTGATTCTGTAAAGTTTCTAGTCATTGATGAAGTTGATAGAATGCTTCAATTCGGACATTATAAAGATGCAACAGAAATTTTAAGGCTAATGTGTCTAGGTGAAACCAAAAGACAGACCTTCTTGTTCTCTGCAACACTAACACTCCCTCAGTATCATAAGAAATTAGCTGGAAAACAACTGAAGAAGGATAGCAAAGAAAGTGTTCAATTGTTAGTTGATAAAGCAAACATCAGTAAAAAGGCAAAAGTTATTGATCTTAGCACCCAGCACATTGCAGCAGAGCAAATAGAGCAAAAGAGAATAATATgcactgaagaagaaaaagatttaTACCTATTTTATATTCTGCTCTGTTATCCTGGAAGAACATTGATTTTTGTAAACAGTATCAATAGTACAAAGAAGATCTGCAATCTGCTGACAATCTTAGGTAGAAATCCATTGCAGCTGCATGCTGGAAAGCAGCAAAGGCAACGCTTGAAAGCATTTGACAAATTTACATCAACTGAAAATGCCATTATGGTTGCAACTGATGTAGCAGCAAGAGGTCTTGATATCCCAGATGTTGATGTAGTTATTCACTATCATCTTCCTAAAGACCCAAAGATTTATATCCATCGTAGTGGCAGAACAGCAAGAGCAAAGAAGGTCGGTTTAAGTGTTATATTGGAAGGCCCAGCAGATTTCAAAGAATATAAGAAAATCTGTAATTTGATGAAGCTAGATGATGATCTACCATCTATTGATATTGATCATAATCTTTTACCTGATATTAAAAAACGTGTTGGACTTGCCATAAGAATTGAGAGAGAAGAACATCAACAAAGAAAGGTTAATACACAAGCAAGAATTGGTTTCAGAGGGCTGCTAATAAGAAAAGGCGCACAGTTACGCACAGAAAACACAGATGATGAACATATTTTCCTCATTGATTTGGAAGACGAAGAACCTAATTATGATGCAGAGAAATGTTCCTGTAATGTATCTTCCGAGGAATCGAAGTGTAGTTGTGGGCCtaagttatcatcatcatcagttgtAGATATAGAATTCTCACCGGGTAATattgatgaaaacaaaacatcTTGTGACAGATTTGGGTCTTCTTCAAACAGGCATAGCCTCCAAATTGATGTGGTAAATTCTGATTTACCCAATGATGTATCCTTATCATCAAACGAAAGCTTTACAATCTGTGAAGAATGTCTATCAAACAGGAAGAACGAATTTCAGGACCTGATTTTGCCCATCCCAACTTTCAGTAATGGTTCAGATAATCTTAACAATAGTAAGGAAATATGTATCTGTTCGAAACATAAAGGTGTCAATGAATATAACAAGAAAATGGCTGATGATTGTGAATCTCAATTAACTTTGAAAGAAACAATTACAAAAGAGTCTTGCAATATAAACTGTATTCCTGATGAAATAATGCTAAAGATTTTCTCATACTTCAGTTTACCTGATCTTTGTAGATATGTAGCACCAGTTTGCTTATCGTGGCTGCAGTATGCTAGAGATAGTACTTTATGGGAGGTCATTTCACAAGAAGAGTTCAAAGATGTTCCTAGTGATTTGCTAGTAAAAGTTGTCACATCTTGGTGTTCATTATTAAGAGATATTGACTTCAGATCTAGAAACGATATGGCATTGGCTGATTTTGTACATATATTTCAATCCTGTCCTTTAATTGAAAGATTTCATTTGCATTCTGTTTGCAGATTGAAGATGAACTTGTCAGAAATTTTCTCAATATTTTCATAA

Transcript

evm.model.HiC_scaffold_13.206

Protein

Uniprot

Uniprot term	Description
A2XVF7	DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_016050 PE=3 SV=2
A3AVH5	DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0510400 PE=2 SV=2
Q5RDL2	ATP-dependent RNA helicase DDX24 OS=Pongo abelii OX=9601 GN=DDX24 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF12937	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR050079	Family	DEAD box RNA helicase	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47959	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14805	DDX24, MAK5; ATP-dependent RNA helicase DDX24/MAK5	EC:5.6.2.7	Ribosome biogenesis	ko03009	deepkoala