Gene detail

Detailed information of evm.model.HiC_scaffold_13.323 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_13:3396567...3399406
NR annotation: XP_041464356.1, uncharacterized protein LOC121415240 [Lytechinus variegatus]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_13.323

ATGGATAGTGGTTCTTCGCTCAACAGCAGATTGACAAGAGATCGAAAACTCACTCTAAgagattttcaaagaatgacaaaaAACGCCCTCAAGTCTAGATGCTCACACTATGGCCTGTCCATCCTTGGCAAGAAAGAAACTCTAGCCTTGCGCCTACATGGATTCCTTCACCGCCCTACCCCTTTCGACTCGGAAAACTCAACCCAAGATGATGCTCCGTTGGAAGATTCAACCACCAACAATTTGCCTGAATCTGCCGCTAATTCTACTCAAGCCAACTTGCCATTTTCAATCGAAATGCTGCGTGGTATCATCCGTGAAGAGCTGAATACAAATCGCATTCAGTCACAACAGCCTACTTTTACATCTCAAGTCCCCCTCTCTCCAGCTTCGCTTATCGTCTCAACTTCAGCTGAGCCTGTACCTCAACAACAAGCACCACCTCGCACCACCCAAAGTTCATCAACTACAATACTGCCGCCAACATCTAACCCAAGCACCAACGAGCCCTCTCACAGTCAAGCAGGTAACATTAATTCTTTTTCATCATTAATGCAAACAACTCAATGTAGTCTTCCTCCgctatcttcaaaaataacgaAAGCGTTGCAAAATAAAGATTATGTTGATTTAAATTCCTTGTTACCTACTTCTCTGTATGACTATGCATCTAGTTCTGGCTATGAAATTcaaatccaaccccccgcttCCCAAGATGAATCTTTTGCCCTCACTGCAATGCGCAATCAGCctaagaaaatctcaaatttcAACTCCTGGCTGGAAGCCTGGAATATCTTCATAAGAGGCATGGTTCATTTCCATCCACAGCTTGCCGGTGAAATGCTTGTCTATCAAGACTCAATTTGCACATTGCAGCGTTCCTACCCTCCTCAGTCGTGGTTACGCTTTGACACCGCATTTCGAATGAACACTGCGCTCAATAAATCTCTCTCCTGGGCCCGATTTGATGATTACGCCTTCAACAAATTTATTCGTTGCTCCTCCGCTTCCACAACCCAACAACCAACTTGCTATATTTGCTCAAAACCCGGCCACTTTGCTTCTGCCTGTCCCAATCAAGGGGATACTTCAACAATAACAACCGCTGCTATTTGCCCAATTGCAAAAACCCCCATCTCTGCAACATCTGTGATGGCAACCACCCTGGATCCACTTGCTCTAGCACTTCAAAAAGAGTTCAACCCCCTGCCAGCAGAAATAACAACACCCGTTAAGATCATTCAACTTCAAACAGAACTTCAAAACTATCCAGATCAGAAATTTGCTAATCAATTAATTCAGTATTTTAAAACAGGTTTTGATATTGGCTATTCAGGTCCCGAATTTGCAAACAACTCAAACAATTTAAAGTCTGCTGATCTTTATTCTAAGCAAATATCTGATAACATTATCtctgaattaaaagaaaaacgtATATCTGGTCCCTTTCCCACTCCCCCTTTGGAAAACTTTAGAATATCACCCATTGGCGCTGTACAAAAGAAAAACTCTACGAAATTCAGAACAATAACGGACCTCTCATCTCCTCATGGTTTCTCAATTAATGATTTTATCTGTGACGAAGAACCTTCAGTGAATTTCAATAACTTTGACCAAGCAGTGAACATCGTATCAAAGTTAGGAAAAGCTGGTCACCCTAATTCTGACGCATGCTACTTGGATCTTCAACAAACAATCGCTCTGTTTAAAAAGCTTGGAGTCCCCTTAGCTCTTGACAAAACAGAAGGACCAACAACGTGTATCACCTACTTAGGCATTTTGATTGATTCCTCGCTAATGCAGCTGCGCTTGCCCCAAGACAAATTCGATTCCCTACTAGCGCTCGTAAAAGAATGGGACAATAAGAAAAAGTGCACAAAACGCGAGTTACTCTCTTTAATAGGTAAACTGGTTTTTGCCTCAAAAGTAATCCCATCAGGTCGCACATTCCTCCGCAGACTGATTGAGTTATCAACTTCCGTTAGCAAACTTAATCATCATATTTCCTTAAATACCGAGGCCAGGAAAGATATCAAATGGTGGCTTGAATTCCTCCCACAATGGAACGGCAAACATCAAATTTTAGACAGCGAAATCACGCTCAGCCCCGACATTCAACTATACACTGACGCTTCAGGTAACACTGGCTTCGGCATTTATAATAACGGAAAATGGGCCGCAGCAAAATGGCCCAATCATTTTCGCGATCGCTCTATTCAGTTCAAGGAGCTATTCCCCATTTACGTAGCTTGTCTGATGTGGTCTCATGATCTCACTGGTAAACGCATCCTTTTTCATTGCGACAACAGAACGGTAGTGGATATATGGTCTTCTAATACGTCAAAGTGTCCACATATAATGTTACTTCTCCGCAAATTGTTCTTCATCGCTGCAAAAAACGAATACACCATCAACGTGAAACATTTAGCCGGCGTTAACAACTCAATTGCTGACAGTCTTTCTCGCTTTCAGATGTCGAACTTCAGGCAGCTAGCCCCAGAAGCACACTCCAACCCGACTCCAATTCCAGACATTGTTTGGCAGATTTAG

Transcript

evm.model.HiC_scaffold_13.323

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003034	Domain	SAP domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR052055	Family	Hepadnavirus polymerase/reverse transcriptase	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33050	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05404	TLR7; toll-like receptor 7	-	Pattern recognition receptors	ko04054	deepkoala