Gene detail

Detailed information of evm.model.HiC_scaffold_13.338 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_13:3645182...3658435
NR annotation: XP_032242889.2, uncharacterized protein LOC5517074 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_13.338

ATGGGTGTGAAGCATTTATGGAGCATTTTGCAGCCTGTCTGCAAGAAAGAGCCCCTTGAAAACATGAGAGGAAAAACACTGTGCGTTGATCTTAGCACATGGATTTGCCAAGCTGAAGAGATCGTGCCTCTGAAAAGTGCCGTCGCCAAACCATATTTAAGAAATACAATATTTCGAGTACTTTGCTTGAAAAGACTTGGAACTCAACTTATCTTTGTAACTGAGGGAACACCGCCACAGTTGAAGTGGGATGTGATTGTAGCAAGGGCTAAAGCACGAGAAGAAGCAGAGAAAGAAGGGAAGACATTTGGTAAATATTCATCAAAAAAGAAGAGACCGGGAAATGAAAGACAAGGGCAGGGTGTTGGAAGTAAAATTGGCAAAGATAACTGCAATGACGCTTCAGCTAACTGCCAGCCAAAGAAAGTTGGAAGATCAAcatttcaaaggaaaattaACGAGTGTGCCCAGCTTTTAAGACTCCTTGGAATTCCAGTTGTGAAAAGTGAAGGGGAAGCAGAGGCTTGTTGTGCTTTACTGAATCGAAAAAAGGTTGCAGATGGTTGCATAACAGAGGATGGTGATACATTTCTTTATGGTGGAGAAGTCATTTATAAACACCTTGGAATCTCTAATAAGGTTTGTACTGCCTATATTGCTTGGTTtgccagttgcccagttgctcggttgctcagttgcgccaTTGCtatggttgcccagttgctcagttgcccagatgctgacttgccaaactgctcggttgcgctgttgctcCATTGCTTGATTTCCCAGTTGCGCGGTTTCCCAGTCTCTCAGTTTAAATTGTGGGCAACTGAGAAGAAATGTCCAGATACTGCATCTACAATTGAGAAACAAGTTTTCAAGAAAATTATGAAAGTTGAAGGATTTCCTAATGAGGAGGTTATCAGAGAATTCTTGGTTCCCCGAGATGACATAGATCAGATTCTTCCCCAAATACGATGGGGGTATCCAGATATCGTTAATTTACAGAGGTTCTGTTTCAAACACATGGACTGGCCTGAAGAATACACTCTCTCTAAGGTTCTTGGTGTTGCAACAAACGAATACCTTCATCGAATTCCGCGAGGAATTCCTTTAGAAAGCCCACTAAGCGCCATCAGATTGGTTAAGACTAGGATTCAGCATGGTGTACCGTTATGTGAGGTCGAATGGAAGACAGATACTTCTAAACGTGCAGAGGAAATTTGGCGTGGATATCCTGATACATTCATTACATTAGAAAGCCAGCAAAGCATCTTAGTATCCTTGCCATCATTGGTggaagaatttgaaaaattcaaagtgCAAAGAAAAGACCTGGTATgtaaaaagaagacaaagaaagtCGAATCTTCTTCAAAAGAGACCGCAGAATCTAATGAAAAAGAGATGATTGGAAATTCGACTGAGAATTCAGATGAAGATGCAGCTCTGGAGAAAGAATCGGAGAATGAAGCGGAGATGTTTGTAGCATCAAAAGTAGCAAACAAGAAGAAAGTTTCAAAATCGGCTGAAGATATTGGAAATGATTCTGAAGAAGAAACACAGCCATTGAAATTTAGAATTGGTCTTGTGTGTAAAGAAGATGAATATTGTGATGATGGCAGTCAATTTGATGGTCGCAGTGTCTCGAAAATGGGCCTAAAAGGCAAATCTGGATCGCAAGGCAGTCTACAGAATTCAACTACTATGCTAGAGAAAAGCAGCAGAGAACATTATATGTCGGAAAATACAATTGATGATGTCGCAAAGTCGTTGTCAAATCTTGATATCAGCAGATCAAGCAATAAGGAATCCTTGAATTATGCGGAAGAGAGGGACAGATTAATTTATCAAAGACTCAGGCTCAAGATCCATTCACATTCTAAGCCAAATGATATTCAGGACTCAGATTCATGTTCTAAGCTGACTCGGATTGAGGATTCGCATTTGCAATCTAAGCTGATGCAGGCTCAAGACTCACATTCACATTCTAAACCAAATGATATTCAGGACTTTGATTCAGATTCTGAGCTGCCTCGGATTCAGGATTTACATTCTAAACATCTACATAAGGcaataatgaaagaaaacttGAATCCAAGTATCAATCAAGGGGGAGTGATGCACTTTTCTGCCGACAGAAGCAAAATCTCAAAGAGTTCTAAACCGCATGTTCAAAGCGTTTCCGAAACGTCCTCGTTGATTGATTCTAACAATGAAAACTGCATGGACAAGTTTAATGGAAATTCTCAGAAATACAGCAATGATGGAGATAGCAGTTGCAAAAGTAGAATCGTCAAATCAGCTCCGAAGGACTCTATCCCTGCTGTGAAGACTACGACAGACAATTCTCCCTTGAAATTGAAGGATACTTTTCCAGAAAGTGGAAGACGTACAAAAGAACCTGATTCGAATGTATTTGTGAGACATATCGGTAATGAGTTATCTGACAGCATGAATGACTTAATACTTAGTGAAAGCATTGGATCTATCTCCTTGCTTTCAAATTCGTCATTCAGTTCTCCAGTTATGGAAAGAGAAGACTGTACATTATCTGAAAAAGCCTTTGATAGTGAGAAGTACATGAGCAACCTCAGAACGAGACTGCAAATTGCTGATTGTGAGCAGAGTATACAGAGTAATGAGTCTCCGGCACGACGTGAAATCGAGTCTCCGAACTGTCAAACCAATGAAAAAAGCAGTGATTTTGTCCCTTTGTCGTTAATCGAAAGAATAAAGCTCAGATCGAAACGATTGTAG

Transcript

evm.model.HiC_scaffold_13.338

Protein

Uniprot

Uniprot term	Description
Q17RS7	Flap endonuclease GEN homolog 1 OS=Homo sapiens OX=9606 GN=GEN1 PE=1 SV=2
Q8BMI4	Flap endonuclease GEN homolog 1 OS=Mus musculus OX=10090 GN=Gen1 PE=1 SV=2
Q9LPD2	Flap endonuclease GEN-like 1 OS=Arabidopsis thaliana OX=3702 GN=GEN1 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00752	XPG_N	XPG N-terminal domain	Family	Interproscan
PF00867	XPG_I	XPG I-region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006084	Family	XPG/Rad2 endonuclease	Interproscan
IPR006086	Domain	XPG-I domain	Interproscan
IPR006085	Domain	XPG, N-terminal	Interproscan
IPR029060	Homologous_superfamily	PIN-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11081	FLAP ENDONUCLEASE FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000400	Molecular Function	four-way junction DNA binding	Interproscan
GO:0017108	Molecular Function	5'-flap endonuclease activity	Interproscan
GO:0004518	Molecular Function	nuclease activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15338	GEN1, YEN1; holliday junction resolvase GEN1/YEN1	EC:3.1.-.-	DNA repair and recombination proteins	ko03400	deepkoala