Gene detail

Detailed information of evm.model.HiC_scaffold_13.424 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_13:4613396...4631231
NR annotation: XP_002168667.1, uncharacterized protein LOC100215426 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_13.424

ATGGCGGACGAAAATGGTACTTTATCTGATGCCGAGCTCCGTGCTGAGTTAAAATCATACGGAGTGAATCCAGGTCCAATTCTTGCTTCAACAAGGCCTACTTTACTGAAgaaactaaatattttgaaaaaagCAAGCCAAAAGAGAAGATCTGTCGCGTCGAGCACGCCAACAAGACACAAGGCGAAGTTGTCGGGTTTTTCTAGTGGAGAAGAAGACTTTCCAAGTCAAAGCGTCAGTTCAGTTGACACACCATCAACGTCTTCAAGAAGAAGATCAGCCCTCCCTAAAGTTGTGTACATAAATAAGACAAAAGATGACATTTCTAACACAATAAGTCAACCACAAGATGAAACAGAGGAAAAAGGGCCTAAGGCAAGTTACAGAAGAAGAAGTTTGCCAAGAAGCTCAGCCAGACCAACCAAGTCacttgaaagtttttcaaatgaTTTTTCTAAGCCAACAAGTACAGTATCTGATTCAGTCGATGACAGTCAAATTCACCAGATTCGAAGTAATGTGAGAAAAAACAGCTTTGAATTTGAGGACGAAGAAGTTACTGATGGTAGCCAATTGCAGGAAAATGTCACAATGCGTAAGAAAAGTCCATTAAAGACTGTTCATTCCTCTGACACTAGCATATCATATCAAAAGACCCGTAGATCGCCAAGGAAAGCAAATCAAACCATGGAATATGAAACCAGCAATCTGAATGATTCAAAGCCATCTAAGAATTCTGAAGATAATgaacaagaggaagaagaatTGGAAGTAGCCTTCGCACGTCCAGCTGGTTTCCTGAACCAAATGAAGGGACCAGTTTTCGTTTTGGTGGTGGCTATTTTGTTGATGTGCTTGGTAGGATCCTACGTGAGCCTGTTTAGTGATAGACTGTCTGCCTTGCCTGCAGATCTGAAAAATGGAAAGACTCTACCAAAGGAAAAACTTCAAGACTATAAAAAGCTTTCTGTCAATGCTGTGAACTTGGCCATGAAAGATAAGTTTGCTGATTACTTCAAGATCGTTGataaaagagccaaaaaagatgTCCCGGTTGATGCAAAGACACTCTCTCAAATCACAATCTCGTCAAACCAAGTTGATAAACCTATTTCATGTCGGCTGAGACAGGCATTGCAACGTTTATCCCGATACATCTTAATGATTGTCTTAGTTCTTGGGATTGCTTTACCGACTTACTATCTTCTTAAAAAGCGTTGGATGATGGATGATGAAGACACTCGTcttatgtttgtttttgttgaacGCATCATAGGTCAGATCAGGCATCATCAAGGTCAGATGaccatcatggtcatcatcatcatcatcatcaacatcattgtcatcatcatcatcatcactatcatcatcataaatcaaaatcatcaaccTTTTGATAAATTGGAAAAAGTGGTTCGTATGCCGATCATTACTCCAACACCGTGTCTTAAGATCAGATACCTTCATGGGGGCCCAGCagAAAAGGAAGAAGGTTGGGATCGTCGTGTCCGAGATGCTCTTCTCGAGAAATGCATTAATGATGGTGCAAATATTTTGCACATTTACGTAGATATTAAGTCACCAGAGAAGTATTTATGGCAACTGGTTCGATGGTCGTTTGGTTATCGTGAAATTCGTTACATTGACTCGTTATCATCAGCGTTTTCCCGACGCAAGGACGGCGACTCAATCGTTGAAATCCTCAGCTACGTTTCCATTGTTGTTTTTCTCCATCATgctcatgatgatggtgatgatggtgttgatgattatcatgatgatggtgatgatgatgatgattatcaatatggtgatggtgatgatgAAATGTTGAGGGAAGTTCTGGAAACCAAATCTTCACTGCAGGTCGCTAAACGCATTTATCTCAACGAGCTAAAGATTGGCGTTTACGTTCCTGTGGGCGATATGTTGCGGCAGAAGAACGATTCGCTACAGCGAAAGAAAAAGGCGAAGTGGAATTACGATGAATATGAGTTATTGCGGCCAAATGAGAAATTGGAAAGAATGAACAAATACACGAAATCTCTACagacaagaaaagaaaaggcaaGGACAAAAAGTCAAGTCGTAAAAACATCGAATTGCCCGTTTTCGACGTTCGATCCGAGAGCGAATCGCCTTGCGACGTTGTTTTCTGTTTACGCCGAACAGTCGGTGGACAGTTACAGACGAGCGGCAAAAGCCAGGAGTTTTTTGCCGCCATTAACGCAGACGTTAAGGGCGTTGAATAAAAGCCGTTGGAAAGAGGCACGTTTACGTCAATTTACCGATGGAACTTCGGAAATGagggaaaatgaaaaaacttcTTTGCCTAAACTTGATTGTGATATCAATCGCCTTGAAAGAAATGTTGAGGAAGTTCTGGAAACCAAATCTTCACTGCAGGTCGCTAAACGCATTTATCTCAACGAGCTAAAGATTGGCGTTTACGTTCCTGTGGGCGATATGTTGCGGCAGAAGAACGATTCGCTACAGCGAAAGAAAAAGGCGAAGTGGAATTACGATGAATATGAGTTATTGCGGCCAAATGAGAAATTGGAAAGAATGAACAAATACACGAAATCTCTACagacaagaaaagaaaaggcaaGGACAAAAAGTCAAGTCGTAAAAACATCGAATTGCCCGTTTTCGACGTTCGATCCGAGAGCGAATCGCCTTGCGACGTTGTTTTCTGTTTACGCCGAACAGTCGGTGGACAGTTACAGACGAGCGGCAAAAGCCAGGAGTTTTTTGCCGCCATTAACGCAGACGTTAAGGGCGTTGAATAAAAGCCGTTGGAAAGAGGCACGTTTACGTCAATTTACCGATGGAACTTCGGAAATGagggaaaatgaaaaaacttcTTTGCCTAAACTTGATTGTGATAGTAATACACTAACTACTGTAAAAGACTGA

Transcript

evm.model.HiC_scaffold_13.424

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03020	LEM	LEM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052277	Family	Inner Nuclear Membrane ESCRT-Associated Protein	Interproscan
IPR011015	Homologous_superfamily	LEM/LEM-like domain superfamily	Interproscan
IPR003887	Domain	LEM domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13428	INNER NUCLEAR MEMBRANE PROTEIN MAN1 LEM DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006998	Biological Process	nuclear envelope organization	Interproscan
GO:0030514	Biological Process	negative regulation of BMP signaling pathway	Interproscan
GO:0031490	Molecular Function	chromatin DNA binding	Interproscan