Gene detail

Detailed information of evm.model.HiC_scaffold_133.28 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_133:410476...422053
NR annotation: XP_002157889.2, endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_133.28

ATGGCAGCAGCAAATAGGCACACGTTTGTAAGCATTGACACTGCTTTTTATGATAAGTATGACAAATCTTCACAAAGTTTCTCATTCAAAAGGtTATGGAGAAGGCTGCCatcttttcaaaaatatgttttgtTCCTGGTTTTATTTGTGATTATACCATGCTTGTTCCTGTTTCTTCATCTCACGTCACCTAACACTTTTGAATTAGAAAGAGACACAGAACATAAGCCCCATGGAGATACAGATCGTCAAATTCCAAAACCATTAAATAGAGAACTAATTCTAGAGAAACTAAAAGAATATCGTGAAAAACAGTCTGGTAATAAAAGGGGACCACCAAAGTTACTTGAGCGAAATAAAGTCTCGGTCCCCCAGAAAGAAACTGAGGAGAAAAAGTTGAGGACAGATGTTGCAAAAACTGATGTAAAAAAGTCTAAATTAGATGAAGTGGACGTTGTCgtcaaaaatataaaagcaaaacCCGTTACTGATTTTGCAAAGCGTCCTGAACTTGTAACACACACTGCCAGACAGAAAGAAGTTATAAAAGCCTTTAAACATGCTTGGAAAGGTTATAAGGAATATGCATGGGGACATGATGAGCTAAATCCAATAGCAAAATCACACAATGAGTGGTTTGGTCTTGGTCTGACTTTAATTGATTCTCTAGATACCATGTGGTTGATGAATCTTAAAGATGAATATAAGGAAGCAAGAGATTGGGTTGACAAAGAACTTCGTTTTGATCGAACTGGCGATGTGAATTTGTTTGAATCAACAATTCGAATACTTGGTGGATTATTAAGCATTTATCATTTAACTGATGATGCCATGTACCTCTCGAAAGCTAAAGATCTTGGTGACAGACTTCTGAAAGGTGCTTTTTCATCCGAATCTAAAATACCTTATTCGGACGTCAACTTGATGATGCAGACTGGTCATTCGCCACATTGGGGTCCACATAGCTCACTATCTGAAGTCTCAACAATTCAGTTAGAGTTCAAGGATCTTAGCAAAGCAACTGGAGACCCAAAATACGCAGTATCCGCTCAAGGTGTAATGGATCACCTGTTTAGTCTACCAAAGAAAGACGGACTTGCTCCGATTTTCGTCAGTGCTGACACTGGTGAATTTCAATCCGGATCAACCATAACACTTGGTGCACGTGGAGATAGTTACTATGAATACCTTCTCAAACAATGGATCCAGTCAGGGTTATCCAATAACAAATTTAAACAAGAATATAGCAAAGCAATCGTTGGTGTCCAGTCCCGTCTCGTACGACGTTCATCTCCTGGTGGATTAGTCTTTGTTGGTGAACTCTTAAACGGATGGACTTACAGTCCGAAAATGGATCATTTAGTTTGTTTTCTTCCTGGCACGTTAGCACTTGGGCATCATTTCGGCCTCGatatcaaacatctgaatttcGCCAAAGACCTTTTGGAGACATGCTATAGGATGTATACTGACATGCCAACGGGTTTAAGTCCAGAAATCGCTTACTTCAATCTTCAAAATGGCGGTAAAGATATCATCGTGAAGGTACGAGAGAAACAAAATCCTGTTTTTTTCATCTTGAAATTATCATTCGCGTTTTTCGTGTTTTCGACCAAATTTTGCGAAATATTATTCGCGCGAAAGATTCTAAAACACGGAATTCGCAAAATTTCATTACAGTTTAATTTTTTGAACACGAAATTTGCTCGATTGATTTTCGGATACTGTACTCCGTtaaagaaaagcattttcatatttGATATTCATCATATCCTTTTATGTCGCAAACCttttttgaaaaagtcaaaTTCACTGGAGTTTATTCGGTTGAAAATGTTGATTAAGCTGAAACGCGAAGGTTTTGTCCTGCTaaacttccttttttccttGATTCGCGAGATTCGATGCCAGAAATTTCGCGTTTTTTCAAGTCCTCAAAGTTACTTCTCGCAAAAGTTTTTCCGCGAAAGTTTTGTTCATTTCTCAAAGAATCCGACGATGCGCTTCCAAATGAGTGTGCGCGccagtttttcaaaatcataa

Transcript

evm.model.HiC_scaffold_133.28

Protein

Uniprot

Uniprot term	Description
A2AJ15	Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase OS=Mus musculus OX=10090 GN=Man1b1 PE=1 SV=1
B2GUY0	Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase OS=Rattus norvegicus OX=10116 GN=Man1b1 PE=2 SV=2
Q9UKM7	Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase OS=Homo sapiens OX=9606 GN=MAN1B1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01532	Glyco_hydro_47	Glycosyl hydrolase family 47	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050749	Family	Glycosyl Hydrolase Family 47	Interproscan
IPR012341	Homologous_superfamily	Six-hairpin glycosidase-like superfamily	Interproscan
IPR001382	Family	Glycoside hydrolase family 47	Interproscan
IPR036026	Homologous_superfamily	Seven-hairpin glycosidases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11742	MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004571	Molecular Function	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:1904382	Biological Process	mannose trimming involved in glycoprotein ERAD pathway	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan