Gene detail

Detailed information of evm.model.HiC_scaffold_14.128 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_14:2017641...2040681
NR annotation: XP_050389772.1, N-glycosylase/DNA lyase [Patella vulgata]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_14.128

ATGGAGACCCAAAAGGCTGTGGAAGACCAAAATATTGATCTGcaaaatgaggTCTCAGTTGAAGAGAAGAAACAACCTGAACCAGCAGCTACAACTACAGAAGATGACAAACCAGCAGGAGCAGAAATAAGTGACAGAGAGGAGAGTTCAATTTCTGTTCAAGACAAAGATATTCCAAATGATGCTGCCAAAGGAGGAACTGATACAGAAGAAGCTGGTTATAAATCTGATCAGTCTGCCTCTGAAGAGGGCAGCACAGACAATGTCGTCGATAGACAGAGAAGCAAGGGGTCCAGTGGTTATGAGGAgagtgatgattatgaagaggggAAGGCTCTGATGTTTCTGAAGTTGTTATTCGATTTGACAATTCCTGTTACAGGCCAAAGAATGGGCAATGAAGATGAGGCAAAGGAGTATGATGAAGGTGTGTCTGACAATGAGTCTAGTGATGTTGTAATTGAAGAATCTCAAAGCGAAAATGGGACGGAGGGTTATGAAGAAGATCGAGAAGATGAAAGTAGAGATGACGAAGAATTCAAAGAAGAGTTAGATAAAGAAGATCCACAAAGCGTGCCTCGGAAGACCGGGTTTTGGGATCATGATGATCGTTTTGAGGAAATATCCATTGAAGAATCCAGGCCTCCAAAAGGTGACCGACAGCTTTGGGACATCACCAGTGAGCGTTGGCAACACGATAAATATGTTGAAGCAGAACAGGGTCCAAGGTCCCTCCGTGAAATAGAGGAATCAGAAAAGCAGTTCGATCGCCGGAACAGAAGACGCAATGAGAGACAGCTTGGGGATTTCATGAGGGAGGAAGAGGGCGACGTGGAGGAGGTAGAGGCGGAGGAGGTAGAGGTGGAGGAGGTAGAGgcggaggaggaggaggaggataTAGAAATGAGAGAGGTccagaaaatgaagatgaatacCGACAAAATGACCGTCGTGGTCCTTCGAGTCATTTGCGAGGATCACCACGAGGAAGAGGAGATTTTAGACGCAGGAGAACAGAAAGAACTCCGAAGGAAAGTGAATACAATGAATGGGGAGCAGATGAAGAAGATATCGATAACACCAATGAAACTGTGGAGCATTCTGATGATTTACAAACTGAACGAATCGATGAGAAAAGAGTCCGCTCAGAAACAAGATTCTACTAAAGTAAAACATGAACATGACATTTCTAGAAGTAAAGAGCAAGATGAAAAAAGACATGCTAACCAAAGTAACGTTAAAAGTCAAGAAAGCAGGCAGTCAGCAAAAAAACAAGAATCTGCGGAGGAGCATCGCGGACCACGTGGTAGAGGTAAAGGAATGACATCAAAGAAGATCACAAGTGCTAAGAAAAGTGCTGTTGATTTCAGGAAAGAACGCAAGAAAAGCGACGAACATGGGGACGAAGAGATTTATGAAGAAGAACCTGATGCAGCCCAACAAAAACACGCAGTGAAGCCCAAGCGATATTCGACGCAAAGACAAAAGCAAGCGACTGCAAATGAAGGAGCGCCGAATCAAACTGATGAATCTGTTATTCAGGATCAGCAATATTTCGATGCTAATTTGCAAGGAAATTATCAACCTCAAAATATTGCATTCAACCCCAATATGATGATACTGTTGCAACAACTACAGCAAATGCAGTtgcagcagcaacagcaacaacaaatgCAGCAGCAACAGTCtgtacaacaacagcaaccagtgcaacaacagcaacaatcaaTGCCATCACAAGTTCCTGGAGGGCAAAATCAAGGACCTGCTGTTTTGACTCCATTAATGCAGCAGTACATGCAACAGCAACTCATGAACATGCAAGCTTTACAACAAGCCTACgcacagcagcagcaacaaatgCAACAACAAATGCAAGGAATCAGAATGGGTCAGCAACCGACGATGCCCTCCGGTGAACCACAAGGTCAAGCGCCCGAAGGAGGTATGATGATGCCAAGAAATGCATTCCCAAACGTATCACAAAATATGCCACACTACAATATAATTCAACAAAATCAACCTGGAATTTATCCACAAACTGGAGGAACGCAGTACGTGGAACAAATGATGTCAGCACCGCAACCTCCAAGTCAACAGTCCGGTCTTTACATACCGCAAGTCCAACAAGTATCGCAGCAGCAAGGTCCTGATGAAAATATTGAACAATATGCCCAGCGAAAAGCACGACCAGCAGCAATTCCAATCAAACCACCTCCTGGTAGGTTCTTCTATCAACGATTGGTCACATTCATGAGTAGtggTTATTTAATGGCTTTGAttcttgaaagagaaaatgcaaTTTTACATTGGAGAGAAATGCTTGGACCTACAAGTCCTTACAAAGCACGTCAGCTGGCACCTACATCAATAAGAGCTTTATATGGAATCTCAGATACTCGAAATGTTGGACATGGTTCAGATTGTGACAAAACTGCACAAAGAGAAATTGGTATCTTTtttccggacttcgattataaTGGCTGGAAAACTTGTGGGCAGTCATTTCGTTGGTCGAAATTTTCACAAGACGAATGGGCCGGTGTTGCCGGAAAACGTCTGTGGATACTCAAGCAAGATGATgattcaatatttttcaaatcgTATGGAAATGTAATTGATAAAGAAAACCATTCACAACAAGTTTCTGACAATGATAATGCTAGGCCTATTGGTACCAGTACCAGCCCCCTCACCACCAAAGATGCAGAAGATCAAGATGAACTCCCTGCCCTTTCAGAGTCAGATTTGGGAGTGGTTGAAGATGGAAAGCTAAAAGACgatgctgaagaagaagaacatgTTTTGAAAGACTATTTTCAGCTGAATATAACCTTAGAAAACTTGTACAAACAATGGAGTCTTGCTGATAAGAACTTTTTCACCTTGTCTAGCAACTTTGATGGAGGACGCATGCTGCGTCAAGATCCAGTAGAGAATTTATTCAGCTTTATTTGCTCCCAAAATAACCACATTTCAAGAATTTCCTCAATGGTGGAAAAACTATGTGTGAATTATGGTGATGAGATTTGTGAGCtagaaggaaagaaatattaCTCTTTTCCAACCCTACTGGCACTTTCAGAAGACACTGTTGAAGACAAGCTAAGAGAGTTGGGTTTTGGATACAGAGCAAAGTTTATTAATCAATGTGCCAAATATATATTAGAAAAGCACTCCAATAAATGGTTGTATGAACTAAGAAATGTTCCATATAAGGAAGCCCATAAAGCCTTATGTGAGTTGCCTGGTGTTGGATCAAAGGTTGCAGACTGTGTTTGTTTAATGTCTCTTGATAAAACAGAAGCTATACCAGTTGATACACACATGTGGCAAATTGCTCAGAGGGACTACCTGCCTCATTTGAAGAAATATAAAACATTAACTGACAAGATTTATCAAGAAATTGGTGACCACTTCAGGTCCATTTATGGTGATTTTGCAGGTTGGGCACATTCGGTTCTGTTCAGTGCTGATCTCAGAAGGTTTAAGGACCTTAAAGAAGCCACTAAGGAGTCAAGCTCCCGTAATGAAACACATAAAACTGCAGAGCAATCTGCAAAGAGTACAAAGAAGTACAAGGTGTTGACAGGAAAGTCAGATAAGGTAAGTCAATAG

Transcript

evm.model.HiC_scaffold_14.128

Protein

Uniprot

Uniprot term	Description
O15527	N-glycosylase/DNA lyase OS=Homo sapiens OX=9606 GN=OGG1 PE=1 SV=2
O08760	N-glycosylase/DNA lyase OS=Mus musculus OX=10090 GN=Ogg1 PE=1 SV=2
O70249	N-glycosylase/DNA lyase OS=Rattus norvegicus OX=10116 GN=Ogg1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09405	Btz	CASC3/Barentsz eIF4AIII binding	Domain	Interproscan
PF00730	HhH-GPD	HhH-GPD superfamily base excision DNA repair protein	Domain	Interproscan
PF00334	NDK	Nucleoside diphosphate kinase	Domain	Interproscan
PF07934	OGG_N	8-oxoguanine DNA glycosylase, N-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR034907	Domain	Nucleoside diphosphate kinase-like domain	Interproscan
IPR018545	Domain	Btz domain	Interproscan
IPR003265	Domain	HhH-GPD domain	Interproscan
IPR052054	Family	Oxidative DNA damage repair enzyme	Interproscan
IPR011257	Homologous_superfamily	DNA glycosylase	Interproscan
IPR036850	Homologous_superfamily	Nucleoside diphosphate kinase-like domain superfamily	Interproscan
IPR023170	Homologous_superfamily	Helix-hairpin-helix, base-excision DNA repair, C-terminal	Interproscan
IPR012904	Domain	8-oxoguanine DNA glycosylase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10242	8-OXOGUANINE DNA GLYCOSYLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0006397	Biological Process	mRNA processing	Interproscan
GO:0035145	Cellular Component	exon-exon junction complex	Interproscan
GO:0006284	Biological Process	base-excision repair	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006285	Biological Process	base-excision repair, AP site formation	Interproscan
GO:0034039	Molecular Function	8-oxo-7,8-dihydroguanine DNA N-glycosylase activity	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0003684	Molecular Function	damaged DNA binding	Interproscan
GO:0006289	Biological Process	nucleotide-excision repair	Interproscan
GO:0008534	Molecular Function	oxidized purine nucleobase lesion DNA N-glycosylase activity	Interproscan