Detailed information of evm.model.HiC_scaffold_14.228 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_14:3236541...3246729
NR annotation: XP_047139286.1, lupus La protein homolog A isoform X1 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P05455Lupus La protein OS=Homo sapiens OX=9606 GN=SSB PE=1 SV=2
P10881Lupus La protein homolog OS=Bos taurus OX=9913 GN=SSB PE=2 SV=2
P32067Lupus La protein homolog OS=Mus musculus OX=10090 GN=Ssb PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05383LaLa domainDomainInterproscan
PF08777RRM_3RNA binding motifDomainInterproscan
PF00076RRM_1RNA recognition motifDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006630DomainLa-type HTH domainInterproscan
IPR014886DomainLa protein, xRRM domainInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR002344FamilyLupus La proteinInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR045180FamilyLa domain containing proteinInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22792LUPUS LA PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:1990904Cellular Componentribonucleoprotein complexInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0008033Biological ProcesstRNA processingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11090LA, SSB; lupus La protein-Systemic lupus erythematosusko05322deepkoala

TOP