Detailed information of evm.model.HiC_scaffold_14.31 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_14:572385...573201
NR annotation: ACM62733.1, Hox9-14A homeodomain transcription factor protein [Clytia hemisphaerica]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P09020Homeobox protein Hox-C5 (Fragment) OS=Xenopus laevis OX=8355 GN=hoxc5 PE=2 SV=1
P14838Homeobox protein Hox-B5 (Fragment) OS=Gallus gallus OX=9031 GN=HOXB5 PE=3 SV=1
Q00444Homeobox protein Hox-C5 OS=Homo sapiens OX=9606 GN=HOXC5 PE=1 SV=1
Gene familySubfamily
Transcription Factors FamilyHomeobox

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00046HomeodomainHomeodomainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001356DomainHomeobox domainInterproscan
IPR000047Conserved_siteHelix-turn-helix motifInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR020479DomainHomeobox domain, metazoaInterproscan
IPR050296FamilyAntennapedia-type homeoboxInterproscan
IPR017970Conserved_siteHomeobox, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45659HOMEOBOX PROTEIN HOXInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0000122Biological Processnegative regulation of transcription by RNA polymerase IIInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0009952Biological Processanterior/posterior pattern specificationInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan

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