Gene detail

Detailed information of evm.model.HiC_scaffold_147.16 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_147:182286...200253
NR annotation: XP_002154954.2, xylosyl- and glucuronyltransferase LARGE2s [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_147.16

ATGCGAGTGTTGGTTGTATGTTCCGTTGGCTGTTCGCTTGTTCTGCTTTTTATGAGCTCTAAACTGGACACCGCTGGAAATTATAAAGATAAATTCTTTCACAAAAATGGAGAGATTGGTGGTTCTGTATTCAGTCTACCATTTGGAACAGCAAGAAAAACTAAAAGTCATGCAGTGATGTTGGGTGACCTTGAGAATGACATAAAAAAGCTGAAAGAAGAGCTGTCATACTCTCAAAGTGCACTTTATGAATTAGAGCAAAATAAAGTTAGCAAAACATTTGGTAATTGCAAACAAGGATTTGGTATTGCAAAATGCCAGGTACTTCACATTGCAATTGTCTGTGCTGGATTCAAAGACAGCCGCAGGGTTGTTACACTGATCAAATCAATTCTTTTTTATCGAAAACACCCACTGCACTTTCATTTTATATCTGATTCATCTGCCAATCTTGTATTAAAGAAGTTATTTGAGACTTGGATGCTTCAGCAAGTTTTGGTAACATTCTATGACACAGAAAAGGCAAGGCCTTTTATTGATTGGATACCAAACAGGCACTACTCTGGTGTATATGGTTTGATGAAACTGACGTTAACGGAATTACTACCAGAGTCTCTTGACAGGACAATTGTTCTTGATACAGATGTGTTCTTTCTTGCTGATATTGCAGAACTTTGGAGTCAGTTTCACAATTTCTCAGAAAAACAGGCTGTAGGACTCGTTGAAAATCAGAGCAAATGGTACCTTGGTAATTTGTTCAGGAATTATAAACCATGGCCGGCTTTGGGACGTGGCTTCAATACTGGTGTAATTTTACTCGATCTAAAGAAATTGAGACGTTTGAAATGGGCACATCTTTGGAGATTGACTGCTGAAAAAGAATTAATGAATTTGCTTCACACACATCTAGCAGACCAGGACATTATCAATGCTGTTATAAAAGACAATCCTTTTCTGGTTTATAAAATGCCCTGTGTATGGAACATCCAGTTCAGTGATAACACGCAAAGTGAGaaatGTTATGCTGATGTCACGGATCTTAAATTGATTCACTGGAATTCACCGAAAAAGACGTCAGTAGAACACAAGCACGTTGATTACTTCAGAAACATGTATCTGACATTTCTACAATACGATGGAAATTTGTTAAGGCGAGAACTATTTTTCTGTGATATTGGCACAGAGCAATCCAGTGAGCCCAATAAGGGTCCAatatctgacagtgatgatgatgcatGCCGTGAATACAATGCTGAATTACAACTTGTGCGACGTGTTCACCTTTTTTACCTGGATTACATTTATGATCCGGTTAAGTATGACGTCACACTTGTTGCGCATTCCTCTATGGATCGTCTTCAGATAATTGAAACACTTCTCACACATTGGGAAGGTCCGGTCAGTATTTCATTGTATGCTTCAGATTCTGAGGCACAGCAGTTTCTTAGGTATAGTCTCAAATCACCTGTTTTGAAAAAGCGAACTAATGTTGGAATTCATCTTGTTTACAAAGACGGGGATTTTTATCCAGTAAACTATTTACGCAACATTGCTCTGCAACAAGCTCATTCaccatttgtttttctttgtgacATCGACTTTCTGCCTGTGCCTGGAATTTATGAAAAATTAAAGAGAATCGCGTCTGAATCTCCAATGCAGCAGAAGGCAGTTGTAGTTCCTGCTTTCGAAACTTACAAATATAAGTTAGATTTTCCAAAATCAAAAGCTGACTTGATATCTGCAATCGACAATGGAGTCATATCAACCTTCAGGAGCAACGTGTGGCCCCAAGGACATGCgccaacaaattttgaaaaatggaaaactaCTAATCTCGACTATAAGaTTGAATGGAAGCCTGATTTCGAGCCGTATGTTATGTTAAAGAGAGATCACGTGCCATTATACGATCAACGATTTGTTGGCTTCGGATGGAACAAAGTCTCCCATATAATGGCTTTGCATGCCTTTAAGTATGATTTTATCGTTGCTGCTAATGTATTTATTATTCATATGCCACATGCACCGTCATTTGACCTGATGAATTATCGACTTAACAGTCAATATCGAAGGTGCTTGGCGAAGCTTAAAGAGgagtttacaaaagaaatggAAACGAAATATTCTGTTAGATTTAACTGA

Transcript

evm.model.HiC_scaffold_147.16

Protein

Uniprot

Uniprot term	Description
O95461	Xylosyl- and glucuronyltransferase LARGE1 OS=Homo sapiens OX=9606 GN=LARGE1 PE=1 SV=1
Q9Z1M7	Xylosyl- and glucuronyltransferase LARGE1 OS=Mus musculus OX=10090 GN=Large1 PE=1 SV=1
Q66PG2	Xylosyl- and glucuronyltransferase LARGE1 OS=Danio rerio OX=7955 GN=large1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13896	Glyco_transf_49	Glycosyl-transferase for dystroglycan	Domain	Interproscan
PF01501	Glyco_transf_8	Glycosyl transferase family 8	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051292	Family	Alpha-1,3-xylosyltransferase/Beta-1,3-glucuronyltransferase	Interproscan
IPR029044	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR002495	Family	Glycosyl transferase, family 8	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12270	GLYCOSYLTRANSFERASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0015020	Molecular Function	glucuronosyltransferase activity	Interproscan
GO:0035269	Biological Process	protein O-linked mannosylation	Interproscan
GO:0042285	Molecular Function	xylosyltransferase activity	Interproscan
GO:0016757	Molecular Function	glycosyltransferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09668	LARGE; glycosyltransferase-like protein LARGE	EC:2.4.2.- EC:2.4.1.-	Glycosyltransferases	ko01003	deepkoala