Gene detail

Detailed information of evm.model.HiC_scaffold_15.171 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_15:1921611...1951712
NR annotation: CAH3106908.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_15.171

ATGCCGACCAGTCAATTATTTCCGAagaatcgccgattagcagtcggcaaccaGTTCTTCCGACTGTGCGCAGCCGAAAAAGCTCGAAATATAGCCATAAGCTATAAAGTTAAAAAGCATTATTTTCGGAATAAGCCCTTCCCTTGGCTATCTTTACCAGCAAATCGGAAAGCGTTGCTTCATAATGCACCTTTAAAACAAACACCTGACAGAAGAAATTACCTGGTTCTGAGTCTGACAATAAAGAATGTTCGGCGTGTAGCGTGTAAGAGTCCGAGTTCCACGGTTCCATTTTGTCCAAATTGTTCCTGTGTTTCTCCGAAGATATCAAAAGATGGGAAAGTCAAGGAAATAGCCCATGAACAACTGCACAGTGATGAAATTGAGCAAAAGAGAAGTTTCATATTAGCCCATTATTTGGAAAGCATGCATAAAGTTAATCAAAAACAACGGCCAAAGTCAAGCAAAAGTTACACCTCAATGTCAGGATCCCAGACAAAGATCAGAAAGTTTGGCTCTCAACCTTCATTGTATGAAGATCGTCCAAAATCTCACAAACTCACTGGTACTGTTGCAAAGAAAACTACAAAGGAGATGGGTGCTTATGCTTGGACCCCCTTAGCAACTCGAACAGCTGTTGGTTTTGGAGAAGATCCATTTGCAAGAAGTCaagaattaaaaaagaaaagaccgATATCTGCTCCAGTTTATAAAATGCAACGTGCAATCTCTTTGACTTCATTGGATACCAAATCATCTTCTTCATGGACAGCATCTTTGGTAACATCACATTCATCCTTGCGGAGAAGAAAATCAAAACAAGGATACATGGCAGACTCAGTCACCCTTTGTGTTCATGCATTTCCTAATGGATCAAGGGAGAATTCTGTCAGAGTCACCGCAAAGAGCATCCTACAGCTTCTCGAGGAAGCTACACAAAAGCTGAGCCTTCCATCTGCTGGTCGTAAGATCTTCCTTCCTGATGGAAATGAAGTAACAGATGCTCGTCAATTGTATAAAGATTGCAATGTATATATTTCCATGGGAGAAGCTTTCAAAGACCCTTACGATGCTCTTAGAGACAAAGAAAGAGTGAGGTTGTCCTCATCATGGACGATGAATGGTATAATGCTACCAGacgaaaagaaaagcaaaaagaaagttTCTTTATCAAAGAGAATGAAAGATTTGGTTGAAAGTCAGAAGAAGAGAATTCTTGTGTTCAGGAATGGGGAAAGTCGTGAAGGAGTTGAAGTTGTTGCTAATAGGTTTGACGAGTTCATGATTGACTGTACTGCAAAGCTTGGTCTTAGTAGTGGCGCCAGGGCTTTGTTTGATTGGCAAGGAAAAGAAGTCCAGAGCTTTTCTGATGTTCCATCTCTTGGTGAACTTCAGACACAATCAGCTGCCAATCTTTTGGGGCCACTTTGGGTTACAAAGGGAGAACGATTCAGCCCAACTGGAGCTtataattttctattttctttggtGATTGAAATGAAACGGAAGATAAAGGAGGACATAAAGCGACTTGAACTGcTTAAAGCTCGTGAGAATGGCAACGACATCGATGTCCAAGAAATCATGTCAATGACTCATGTAGAAATTGAAAAGGAGATTGAAGATGTAAGCTCTGCTGTAGACAACCAGCGAATTTCCCTGAAAAGATTGAAGAGTTATCTCAAAATCACAGCAAAGAAACACCGAGAGGAAACAAATCAAGGAAGCTCTTACAAATTCCAGCACATTTCTGAAGTGAATGAAAACAGTCGATTGCTTGGCGTAAGAGGCTACCGTCTGAAACTAAGACTGAATGGGCAGCCAGACTGTGAACCAATTATCCTGCATTTCAGTAACAAAGACATTGAGAAAGGCAAGAAAACCAAAGAGGAATCATTGCAAGGGTTTTTCGATATGTTGAATGGTCATGAAGGATTAAAAGAAGCTTTCATTGGACATGGTAGAAGGAGTGTTTTCAGAAGAGCATTTCAGACAGATGGGAAGGAAATTAAAGATTTCAGTGATATTGGCACTGATGCAGAGCTTTGGCTGTCGTTTGGCGAGGATTTTGTGCCAACTGAATATGATGTCATAAGCCTTGCTTTCGACAAAGTCAAACTGCTGAACCTTTGGAATGAGAAGTCATTCTTACAAAGGGAAAGCTGGCTTGGTGCTGATGAGAAAATCACCAAACCCTCATTATGGTCGCCAACTACAACTTTATCTATCAATGATTTAGAAAGAGTGATAGTCCCAGATGCTacttcagaagaagaaaagttaCGAGTAATTGATAGTTTTAATACTGCCCGGATACCAACTGACAGCGTGGTTCTACAGTGTAAAAAGGACCCAAAGCTGGTTTTGTATCCGGATATTCAAGCGGTTCGTATTGGAAGGGAACAAGATGCAGATTTATGGGGTGTTGGTGTGAGACAATGGATCCTAACAAGGgaTGGAGCAATAATGAACAAAGCCTTTCGAAATCTCGTCCTCTCAATAAAGCAGCAAAATATTGCAATTGTTGATGGAGAAAAGAAAATCGAGGGCCATGCTGTTTGCCTCGCAGAAAGAATAATCCCAGTTTTACTTGATGAGAAGGAGAAGGGTAACCAGGAGAAAGACAAATCGGAAATTTCATTTGGTAAAGACGAGTCAAGTCAACTACAGAAATGGAAACTAACTTCAGATGGACATATCGTGTCTGTAGCGTTTCCTAGCCTTTATCTTACAAGCTTAACTGGACTCAAAGTTGAAACGATATACGCtgagaagaaagaagagaaaaatgatGCAAAGGAGAAGAAGACATCAAGTAGCGATGACTCAAGTGACGAGATGAGCTCAGACGGAGCTGGAAATGACGATAATAAATcgaaaagtaaaaagaaattgaaaaagaaatcgaagaaaggaaaacagaaaaagaagtGGTGGAATTTTGACTCCAGCAGTAGCAGTGATAGTAGTGACAGCGAAAGTGGGAGAGACAAAAACAAAAGGAACTCAACTGATAGTATTATTGTGCGAATGAAGGGAACTAGCAGTGAAGATGATAAGACGAATACTGAGCAACTGGAAGAGGGGGAAAAACAGGAAGagaataatgatggtgatgttgatggtgaaaATAAAGGCAATAATACTGCAGAGGATCGTTTGAAGAATTTACCAGAGAAATATGGAGGTGAAACCGCATTGCTTGGAATTTTTGAAGGATTTGCCAGTGGTGACTACCTGAGAGTACGGCAGAGGTGGGCCATAAAGAAATCAGATCCTTCTGACGTGATTTCAGATGATACCCTTCCTGACAAGTGGATCCGGCAAGGTCTTACTTGGCCCGTAAACGAGGCAGATGCTTGGATCGAGGACGTTGTCGATGGCTACTTGTTGCCTTGCGCCCCTAAACTGAAAAGGAAGCTACCAGAGAAGGAAAAAACCACTAATGTTACATTAGGCCGTCCTGCTCGATTAAAAGTCTTGAAGAATGGTGAACCAGATCAAACTACTGCTTGTATAGTTGTTGGACCAGATCTGAGCAATGTAAGCAGATGTTTTCTTATGATCTTTAAGTTGCACAAAAaacaacaacaacaactaaagatggtagctgcgataactgagactcgtgtaataagtctagcagtAAGCAtgaaatttttcttatttgaacAGTTTTTAGACAAATGCACAGAAGCCCTTAATCTCCCTTTCGCGGCACGAAGATTGTTTGACGAGAATGGCAAAGAGCTCTTTTCATTGGCTGCACTGGAGCGAGACCAGCTGGTTTATGTTTCGACTGGAGATTCGTGGATCAACCcgaatttgacttattctgagCAACAAAGAAGATTGCTATTGGCTAATTTAGCATCTGATGTAAACAAGATTAGAAATTTCATCACACTGAGAGACCAAACTGATATGATCTTGCAAGTCAATGGAGCATTACATGCTGGATCTAGCGTGATTATAAGCAGAAAAACagctgaagatgatgatgaaaatgaagatgaggAGGTTATCGATGATCAACAAGAAAACGAAATTAGAGATCTCCATAAAGCGTCATTAACATCACATCAAATCGCACATATCAGATCAGAAGAACGTCTACAGAGCATTCGTGATAGAATTCAACAAGATTCTGGTTTCATCTCAATAAAAAGCACTGGTGAAAATAGCGACGAGGAATTCCAGTTTTCAAATCCTTCACTTGCTAGAAAATTCAGTAGATCAACAGAAACAGTCAAATATCCATCGTCTGCTTATCATCAATGGTCTTTTAATGATGGCTTTATACATCTAAAAGCAAACAAGAAACTCGTATTAGGAGTTCAGCAAAATGAAGAGTCAAAAGGTGGCCAAGATGTAATATTATGTAATAAGAAGGTCGAAGACTCATTTCAACGATGGATTATCTCTGAAGACGGATTTATCCATTTAAAATGTAATCCACTGTTGGTTCTGACAGTGGCAACCCCCCTGTtaaaaacagatccattcagcGATGCAAGTGCTTCTGAGGGCTATGACGGGTCACGCGTTATTCTTGGTCGTCGCTTAGACTGCTTAAATGGTAACTCGCATCAAATGTTCAGTCTTGATGCAGAAAATGGCATTATCAATGCATTTGCAACAGATGCAGTAAATTCTGAAATAACTGCGGCCAATAAATCATCAGTTTGCACATTTTCTGTACTGGGTTCAAGAAGTGTTTTTCAAATGGGATATATTGTTCAAGATGGCACTAAATCTGGTCAGAATCGTGTTCTTGTATGTGAAAGCTGTGGAAAGGCAATTCGAGGAAAGCAAAAGCTGCAAAGAATCGCTGAGATCGCACAGTTTGTTTGTGCGATGGGCACACcTGAAGAATTCGGCCttacaacaacaggaagtttcaGATGCCTCACCAGCAAAGTAGATCTGTCGCAAAAAGAAGCAGAATCGACGTTGCTGATGTGGGAGATGCAATTAAACCGGCTTCAGAAGGAATCAAGTGTCCGTGTCATTGCATATGAACTGAACTTGGCTCAAACAACTCCCTCTGTCAGAATCTGCGCCAGAAAGAACGGTGAAAGTGGTGATGGGGTTATTGTCaatctcgtccccagggtgaataggcctctacgtgaaactctgctgtccatattcgaccctgttatcaatgaatttttttgcatttcctttctaagaacatctgctttcggaatctacatcttgtttttatcagtaggccaaaattgccacaTCAGTTCAGGACATTCTCTGGGTAGCGAGAAACATGTTTCGTTCGCTGAAGGATTGAACGAGGAGAGGACTTTTTACCCAGAGATTGAAAGAATGGATGTCAGAGTTCCTATTGATGTTTGGATATCATGCGGAGAACCATTCATCTCAATTGGAGaaaCAGAAAAGCATGCGATTCAATCCatgaaagaaagagaagaacgaaCTGCAATTTCTAATTATCTGGAGCAAGACAAGCATATACTGAGACAGATGCAAGGACGGCGATTAGCTGGCAAGTGCCCTTCAACGGGGATAGATAGTCCTGTCAAACCAGTGTTAAGCAAAGTCTGGGACGAACCAAGCAAAAAGGAAGAGAAACTGGAAGAATCGATTGAAAATCTTCAGcTTCATCTTTCTGaattaaaaatgaaacaagaggAAGAACAAATAAAGGATCTGAAAATGAGACCAAAAAGTGCCAAAAAAATCGACAGAACGCATGACAGAAAACTTTATGATTTACCAAGAGGAATTAGTGTTCAAGTTTTCCCAAATGGTGAAAGTCCAAATCGAGCTGTCTCCGTGGTTGCTACCAATTTTACTGAGCTTTTGGACAGAGCAACTGGGAGGTTGGATCTGAACAGTGCAGCAAGACGAGCGTTTACTGTAGATGGAACAGAAATTTTTGACTTCGACAATATCGAAAAAATCAGTTCTTATGCGTGTCTGTTGGTGAAAAGTTTGTTCCAAGCAAAGaTCGACAACACAAAATGGAACTTCGAGCCTCGTGGTCACGTCTTCATCGGGATGGTGATGAAAAAACAAACTCGATatgtatcacacgagtaccgaagtcttgcatattactatGTTAAGTTGAATTCGAGTCCTGTTCTTGCTCTTCCTTGGTCGTCTACTGGCCCAAAGGCAAATGACGAAATTGAACGAGAATTAAAAGAACTGAGTCACACAAGCGCCCCAGAACAGCGCGGCAAAGACATTTAA

Transcript

evm.model.HiC_scaffold_15.171

Protein

evm.model.HiC_scaffold_15.171

MPTSQLFPKNRRLAVGNQFFRLCAAEKARNIAISYKVKKHYFRNKPFPWLSLPANRKALLHNAPLKQTPDRRNYLVLSLTIKNVRRVACKSPSSTVPFCPNCSCVSPKISKDGKVKEIAHEQLHSDEIEQKRSFILAHYLESMHKVNQKQRPKSSKSYTSMSGSQTKIRKFGSQPSLYEDRPKSHKLTGTVAKKTTKEMGAYAWTPLATRTAVGFGEDPFARSQELKKKRPISAPVYKMQRAISLTSLDTKSSSSWTASLVTSHSSLRRRKSKQGYMADSVTLCVHAFPNGSRENSVRVTAKSILQLLEEATQKLSLPSAGRKIFLPDGNEVTDARQLYKDCNVYISMGEAFKDPYDALRDKERVRLSSSWTMNGIMLPDEKKSKKKVSLSKRMKDLVESQKKRILVFRNGESREGVEVVANRFDEFMIDCTAKLGLSSGARALFDWQGKEVQSFSDVPSLGELQTQSAANLLGPLWVTKGERFSPTGAYNFLFSLVIEMKRKIKEDIKRLELLKARENGNDIDVQEIMSMTHVEIEKEIEDVSSAVDNQRISLKRLKSYLKITAKKHREETNQGSSYKFQHISEVNENSRLLGVRGYRLKLRLNGQPDCEPIILHFSNKDIEKGKKTKEESLQGFFDMLNGHEGLKEAFIGHGRRSVFRRAFQTDGKEIKDFSDIGTDAELWLSFGEDFVPTEYDVISLAFDKVKLLNLWNEKSFLQRESWLGADEKITKPSLWSPTTTLSINDLERVIVPDATSEEEKLRVIDSFNTARIPTDSVVLQCKKDPKLVLYPDIQAVRIGREQDADLWGVGVRQWILTRDGAIMNKAFRNLVLSIKQQNIAIVDGEKKIEGHAVCLAERIIPVLLDEKEKGNQEKDKSEISFGKDESSQLQKWKLTSDGHIVSVAFPSLYLTSLTGLKVETIYAEKKEEKNDAKEKKTSSSDDSSDEMSSDGAGNDDNKSKSKKKLKKKSKKGKQKKKWWNFDSSSSSDSSDSESGRDKNKRNSTDSIIVRMKGTSSEDDKTNTEQLEEGEKQEENNDGDVDGENKGNNTAEDRLKNLPEKYGGETALLGIFEGFASGDYLRVRQRWAIKKSDPSDVISDDTLPDKWIRQGLTWPVNEADAWIEDVVDGYLLPCAPKLKRKLPEKEKTTNVTLGRPARLKVLKNGEPDQTTACIVVGPDLSNVSRCFLMIFKLHKKQQQQLKMVAAITETRVISLAVSMKFFLFEQFLDKCTEALNLPFAARRLFDENGKELFSLAALERDQLVYVSTGDSWINPNLTYSEQQRRLLLANLASDVNKIRNFITLRDQTDMILQVNGALHAGSSVIISRKTAEDDDENEDEEVIDDQQENEIRDLHKASLTSHQIAHIRSEERLQSIRDRIQQDSGFISIKSTGENSDEEFQFSNPSLARKFSRSTETVKYPSSAYHQWSFNDGFIHLKANKKLVLGVQQNEESKGGQDVILCNKKVEDSFQRWIISEDGFIHLKCNPLLVLTVATPLLKTDPFSDASASEGYDGSRVILGRRLDCLNGNSHQMFSLDAENGIINAFATDAVNSEITAANKSSVCTFSVLGSRSVFQMGYIVQDGTKSGQNRVLVCESCGKAIRGKQKLQRIAEIAQFVCAMGTPEEFGLTTTGSFRCLTSKVDLSQKEAESTLLMWEMQLNRLQKESSVRVIAYELNLAQTTPSVRICARKNGESGDGVIVNLVPRVNRPLRETLLSIFDPVINEFFCISFLRTSAFGIYILFLSVGQNCHISSGHSLGSEKHVSFAEGLNEERTFYPEIERMDVRVPIDVWISCGEPFISIGETEKHAIQSMKEREERTAISNYLEQDKHILRQMQGRRLAGKCPSTGIDSPVKPVLSKVWDEPSKKEEKLEESIENLQLHLSELKMKQEEEQIKDLKMRPKSAKKIDRTHDRKLYDLPRGISVQVFPNGESPNRAVSVVATNFTELLDRATGRLDLNSAARRAFTVDGTEIFDFDNIEKISSYACLLVKSLFQAKIDNTKWNFEPRGHVFIGMVMKKQTRYVSHEYRSLAYYYVKLNSSPVLALPWSSTGPKANDEIERELKELSHTSAPEQRGKDI

Uniprot

Uniprot term	Description
M0R2J8	Doublecortin domain-containing protein 1 OS=Homo sapiens OX=9606 GN=DCDC1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR003533	Domain	Doublecortin domain	Interproscan
IPR036572	Homologous_superfamily	Doublecortin domain superfamily	Interproscan
IPR000772	Domain	Ricin B, lectin domain	Interproscan
IPR043188	Family	Doublecortin domain-containing protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46302	DOUBLECORTIN DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0035556	Biological Process	intracellular signal transduction	Interproscan
GO:0008017	Molecular Function	microtubule binding	Interproscan
GO:0030496	Cellular Component	midbody	Interproscan
GO:1902412	Biological Process	regulation of mitotic cytokinesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K23400	DCDC1; doublecortin domain-containing protein 1	-	Chromosome and associated proteins	ko03036	deepkoala