Gene detail

Detailed information of evm.model.HiC_scaffold_16.25 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_16:271523...287152
NR annotation: XP_047135540.1, solute carrier family 49 member 4 homolog isoform X2 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_16.25

AtgaagtacggagaagtaccaaaaagtactgacgactaccacaaagtaccgacaagtaaaacaaagtaccaagaagtaccacaaagtacggacaagtaccataaagtaccaagAAATACCCccaagtaccgagaagtacatcaaagtactgaaaagtaccacgAGaaaaatgaaacaaacaagGCAATTGTCGTTGGCTGCTATGAGGAACACAAGCTAAGCAGTTTTGGTGAACAGGTTGACGAGAAATGCAAAGGAAAACTTTCTGAACTTCTGAAAAGAACAGAGTTTAAGGGAAAACCTGGAAAGACAAGAATATTTCATGAGTTGTGTGAGGATGTAAGCTGTGTAGCAGTGGCTGGTTTAGGTGAGGAAAATGCTGGATACAATGATAATGAAGAGTTCGATGCAAGGAGGGAAAATATTAGGCTGGGAATCGGAGCTGCTGCAAAAGAACTACAGAAGTTTGCGATCGACAAAGCTAAAATTGATCCTTACTTGGAACCTTCAGCTGCTGCAGAGGCAGTTACTCTGAGTTCATTTGTATTTGATGAGCTGAAatcagaaaagaagaagaagcataCAGTATTCTCTTTGTCACAAGGTGGAAACGGGGACCGAAAATGGCTGGAAGAGAAGAAAATGGGCTGTTTTCTTGGAGTTGCGCAAGGATCAGTAGAGCCTCCAGTGTTATTAGAAATAAAGTATACTTCGTTGTCTTCTAATAAAACTGTTGCAGTTGTTGGAAAAGGTGTTACGTTTGATACtGGTGGTATATCACTCAAGCCATCCTCGAAAATGGCTGAAATGAAAGGTGACATGGGTGGGGCAGCATGTACGGTCGCTTGTGTGGAGGCGGCTTCGAGGCTTGGTCTTGATATTAATGTTATTGGACTGGTTGCCTTAACTGAGAACATGCCATCCGGGACTGCGATTAAACCTGGCGATGTTCTGACAGCAATGAATGGGAAAACGGTCGAGGTTGATAACACAGACGCAGAAGGACGGCTGATATTGGCAGATACCCTCGTTTATGCCCACACTTTCAACCCGTCGTCCATTATCAATATTGCGACACTTACAGGTGCTATAAATGTTGCGTTGGGCTATGGTGCATCCGGAACTTTCACAACATCAACAGCACTTTGGAAATGTCTGCATGAGGCTGGCAAAAGAACAGGTGACAGGCTATGGAGAATGCCCTTATATCAATTGTACACCGAAGAGATGAAGTGCAGTCTGACTGCAGATTTGAGAAACACACAGAAAACTGCCGGtgcTGCAGGATCATGTACGGCCGCTGCATTTCTTAAGGAGTTTGTAGAAATTGAACGATGGGCTCATATAGATATCGCAGGCGTCATGTCCAGTAATGGTGAATTGCCATATCTTCCAAAAGGAATGAGCGACCTATGCTGTGAAGGAGAACACCTAAGACTGAGacccaacaacaacaaaatcttcCTTCTCATtattattttgaaatatcttcTCAACATGAGTCGTTCAGAGGAGGAACCACTGCTAAAGCGAAAGCACACATCAATCAACCAAATACTCGATACACAAAGTTTGGACTATGGGGCTTCAAGTTCCTACTCCGAAAACGCTGTTGTTTGTCCTTCGGATGCTCAAGTGCGAACCAAGACTTACTGGTACCGATGGTACATTCTTGGACTATTCTCATTAGTAGGTGCCTTAGAAAACATCACATGGAATACGTGGGGTCCCATCGAAGCAAGTTCACGGAATGTTTATGGATGGGACAAAGGGACAGTTTCGTTATTGGCCGATTGGGGAGCAATCACTTTCGTTCTTGCCGTATTTCCATCAGCTTGGGTGCTTGATGTTAAAGgCCTAAGAATGTCTGTTATCCTATGTGCATTTTTCATAACAATAGGAACTGGTCTACGATGCCTCTCCAATGAGCCATCAACTGCAACAATTTTAATTCACATGGGACAATTCATTCTTGGCCTAGGTGGACCGGTGGCTCAAGCATCAGCAACAGTGCTCTCAAGCACATGGTTCCCACCAAAGCAACGGACTACGGCTACTGCAGTGGCATCACTAGCTTCCTATGTTGGCACATCAATAAGCTTTGTAATTGGTCCTCGGTTTGTTACTGAtatagaaaaaataaagaacaatTCTTCCAACACAAGCGATGTTACAAAACAAATATCTAGTGAAATAATGAACCTGCTTTATTTTGAGTTTGGTGTTGGTTGCTTTTTACTTTTTATGGTTTTGGTGTATTTTCCTGCAAAGCCTCCACTCCCTCCAAGTATAACAGCTGCCTTGGAACGAGTTGACTACAAACATGGTCTACTGCAGTTGCTGAAGAATAGACAGTTTCAATTAATTGCTTTTCTGTATGGAATAACAAGTGGAGTTTATAGTGCCTGGTGCTCTGATTTAGCATTGAATCTGTCTGCATACAACATTGACAACGATGAAGCAAGTTGGTTTGGTTTTTGGCTGTTGTTGCTGGCTCTGCCTCTGGTATCATTTTGTCCCTGTGGgATAGCTGATTGGTTTGGTGGATACATGAAAGCCATTTTACTTGTCTTGTTCACTTTGGgaacatcatcattttcagTATTTGCATTGATGTGCCTTCACATCATTCCACCGTCAACACCAGTACTCTATACCACTTCAGTCATAGGTGGTCTATGCCTGAATGGAGCGATACCTCTATTCTTTGAGCTATCCGTTGAGTCCAGCTACCCTGTAGCAGAGGGCGTCAATACTGGATTTATGACATTTTCAAATAATGTTTACTGTTTGATTTTCCTGTCATTGCCGATGATTCCTGGCATAGGAACCAAGTGGATGAACTGGGCACTTGTTGGGAGCTGTGGCATATGCATACCGATGATGCTGTTTTTCAAAGAGAAACACAAAAGGCTTGCCGTTGATGTCAAATCTGGTGCACAAAATGCTAATCATATTAACAGTTCAATGCAGTTTGCATAG

Transcript

evm.model.HiC_scaffold_16.25

Protein

Uniprot

Uniprot term	Description
Q5XGB9	Cytosol aminopeptidase OS=Xenopus tropicalis OX=8364 GN=lap3 PE=2 SV=1
P28839	Cytosol aminopeptidase OS=Sus scrofa OX=9823 GN=LAP3 PE=1 SV=2
Q68FS4	Cytosol aminopeptidase OS=Rattus norvegicus OX=10116 GN=Lap3 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07690	MFS_1	Major Facilitator Superfamily	Family	Interproscan
PF00883	Peptidase_M17	Cytosol aminopeptidase family, catalytic domain	Domain	Interproscan
PF02789	Peptidase_M17_N	Cytosol aminopeptidase family, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011701	Family	Major facilitator superfamily	Interproscan
IPR000819	Domain	Peptidase M17, leucyl aminopeptidase, C-terminal	Interproscan
IPR011356	Family	Peptidase M17, leucine aminopeptidase/peptidase B	Interproscan
IPR043472	Homologous_superfamily	Macro domain-like	Interproscan
IPR036259	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR008283	Domain	Peptidase M17, leucyl aminopeptidase, N-terminal	Interproscan
IPR049604	Family	Solute carrier family 49 member 4-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11963	LEUCINE AMINOPEPTIDASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0070006	Molecular Function	metalloaminopeptidase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0019538	Biological Process	protein metabolic process	Interproscan
GO:0030145	Molecular Function	manganese ion binding	Interproscan
GO:0008233	Molecular Function	peptidase activity	Interproscan