Gene detail

Detailed information of evm.model.HiC_scaffold_160.30 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_160:266195...270208
NR annotation: KAJ7383158.1, RNA-binding protein 28 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_160.30

ATGTGCACTGAGGATAAATTAAATGAGGCTTTTGGAAAGTATGGGCAAGTAGTTAAGGTAGAACTGCCAATTAAAGTGAACtcaaaaggaaagaaaaggtTCCTTGGATTCGGTTTTGTTCAGTATTCAAACCAAGCTGAGGCTAAGAAAGCAATGGATGGCTTGAATAAGAAGGATTTGCTAGGAAGGCCCATGGTTATCGATTGGGCTGTGCCTAAAGATGAATACCAAAAAGATAAGGGAGCAGAAGCCAAACCCGACAGCAAGGAAGAGTCGAAAGGAAACAAAAAGCTAGAGAAggagaaaagagagaaaaagaagaaggtcAAAGAAGAGGCTGATTCGGATGAAATGGGTGAAAGTGAAGAGGAAGAAGGGGAtgaagatgaggatgatgatgaagaatcaGAGATAAAGGGTAGAAAAAGAAGGAAGAGTCAAGAAGAAGGAGGCAGTGGCGAAGATGACGGTAAAAGCGATAACGACGAGGAAAGTGGCGATGaaaacgatgaagatgacgacgGTATTAGCGATGAATGGGATGAAGACGAAATAAGcgatgaagaagacgatgaagattTTCAGAGGAAAGAGGAAGAACGTAAAGAACGATTGAAAAAGCAAGCTAAAGACGCTAAAGAAGGAAAAACGATTTTCATGAGGAATTTACCGTTTGAAGTAACAGAAGATGAAATCATTGAGACTTTTGAAAAATATGGAGACATCGATTATTGTAAGATTGTTTACGACCAGGAAACAGGACACAGTCGTGGAACTGCGTTTGTGAAATACAAAGAAATTGGTGCCGCCGATTTGGCAGTGTCACAGTCAGAGGAAGGGGTAGATGATCAGGGGATTGTCATTGGTGAAAGAAAGATTGCAGTTATGAAGGCGGTTACGAAAGGAAAGGTTAAAGAGATAGAGAAACAGAAGAAAATAGCAAAGAAGGACCCGAAGGATAAGAGAAATTTGTATCTCGCAAATGAAGGGGTGATCTTTCCAAACTCAGAAGCTGCGAAGGAGTTGTCTGAAAGTGatttgaagaaaagagagaaGGCATGGGCAGAAAAGAAAACCAAATTGAAGAATCAAAATTACTTCATTTCGAAAACAAGGCTTTGCTTTCGCAATTTACCTTTGACTGTTGACGAAAAAGAATTGAAAGACTCGATAAAGTCATACTGCCCTAAAGGAGGAAGAATTCTACGAGCGTTGGTGATGAGGAACAGAGAGAGACTGGACAAAACAGGGAAAGGTCGTTCTCTCGGCTTTGCTTTTGTTGAATTCAGTACGCATGAGCAGGCGCTGGCTGTCTTGCGGGCAACCAACAACAACGCTGATATTTTCGGAGCAAATAGAAGGCCGATTGTGGAGTTTTCAGTCGAGAATCAGCTCGCTTtgaatttgcagaaaaagaGACTAGAAAGACAGAAACAGAAAGCTGATAAGGAGGGTGAAAATGATAAAGAGGCTAAAGATGATAATGAGGCTGGACGTGGAAAAGAGGCTGGAGGGGAGAGAGAGACCAGAGGGTTGAAAAGAAAACGTTACGGAAAAGACAAACACAAGAAGAAGAGAGCTGAACAAGGGGGACATGACGAGGGGTTGAATGAAACGGGTAAGGGGGAAGGAGATGAGGGAAAGTCTAGAAGTTCGGATCAGCCTACTGTTAGCCAGTCGAACAAttctaagaaaaataaaaaaggcaaaagaCGTTCTGAAACCGaaacgaaaaagaaaactgGAGACAGCGCAGGCAAAATCGAAAATAACAAAGGAATAAATATTAATCATGATAGAAATGAGATAAAAAATCGCAAAAGAACTCATGAAAATCGTGATGCTCCAATCAAAGCGAAAAAACCGAAGAAAAAACTTGTAAAAGACCCCCAGGAAGAGAAATTCAACGTGCTTGTTaataaatataaagaaaaattattcGGTGATCAGTTAAAGAAGAAAGCTGAAGGAAAACGCTGGTTTGAATGA

Transcript

evm.model.HiC_scaffold_160.30

Protein

Uniprot

Uniprot term	Description
Q8CGC6	RNA-binding protein 28 OS=Mus musculus OX=10090 GN=Rbm28 PE=1 SV=4
Q9NW13	RNA-binding protein 28 OS=Homo sapiens OX=9606 GN=RBM28 PE=1 SV=3
O74400	Uncharacterized RNA-binding protein C4F6.14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC4F6.14 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR051945	Family	RRM MRD1 RNA Processing and Ribosome Biogenesis	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48039	RNA-BINDING MOTIF PROTEIN 14B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14573	NOP4, RBM28; nucleolar protein 4	-	Ribosome biogenesis	ko03009	deepkoala