Gene detail

Detailed information of evm.model.HiC_scaffold_163.15 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_163:245762...264149
NR annotation: XP_047127302.1, prominin-1-A [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_163.15

ATGCATTCAGTGCTGTTCATCGTTACTTCGTTACTTTTGATTAAAGAAAGTTATTCTGTAAAGAAGTGCCTAAATTATTTACCAGGAAATGGCGTCGATGTTGTTGGCAATAAAGTTACATTTCCACCTACGAAAGATGAACCTCGCACCTCAAAAATTTTAACTCAATATGACAGTAAGGGTTTGGATCCTTTTTTTAATCTTGCTGAATCTTTTATGAATACAGTTCAGAAGAAAAGTTTGCCATCAATTGAAGATGCAAATGGGAAGATAAGGAAAATGGATGACATTCTAAAAGAAGTGAAGAGCATGAAAGGACAGATTTATGACTTTGAAGTCCCAATCATTGCAGCAGTTGGCGTTGGCATTGTTTTGGCACTTCTATTGCCAGTCATTGGTTTCTGTTTTTGCTGTTGCAGATGTTGTGGAAAATGTGGAGGAGAAATGattcaaagcaaagaaaatgcaGAGGCACATTGCAAATGCTGTGCCTTCTCTCTCATTCTTTTTGTTGTTGCCATCTTCATGCTGTGTGGCATGCTGATGATGTATGTGACAAATAACAATATCAAAGCAGAAGTGGCCAAAACTCCAACAACATATGACAATGCTTTGGATGAAGCTTGGGATTACATGAAAATTGTGAACAAGcAATTACAAGAAATAACAGGGAATAAGACGGATTGCCTTTATTATGATCTGATTTTACCTGACATCAGTGACCAAGGAGTGAAAGACCAAATTGGTGTAAAACTCAAGAATATTCTGATGCCAAATGTCATTGGCGCATTGAATGCTGTCAAAGAAGCAACTAACAATGTATCGGCAATGAGCTCTGCATTGGCAATTGTTTCAAACACAACAGCAGTTCTTACAAGTTATGCTTCAACATTGGAAACTCAGTTGAATAAAGCTCGCAATGATCTTAATGAAATCAAGACAAATTGTTCCTCGAGACCATTTATTAATGAGACATGCGCATCGATTGATACAAGTGGTCTTAAGCAAGAAGCGAATTTCACAACTCTTCCAAACGTCGATGGTGAACTCTCAAAAATCCAAGATATTCTCAACCAGAATTTCTCTGGCTCCGTTGATGAGGcgtttaaaattttcaatgatATCCCAGATACAGTTGTAAATAAAGCCTCACCAACACTTGCAAATATCAGAAATCTTACAAGAGATGGAAAGGACAAATTAGTAACGTCTGCAAAGAAGATTACTGACAAACTGGATGATATGATTAACCAGAAATCGGACTAtgagaaatacaaaaaaaattatCTTGATAAATCTATTTCTTATGACAAATACAGGTTCTATGGTTTCATTGGATTATCAGCAATTGTAACATTAATTGTTAGCTACTGGCTTCATGTTCCTATTTGCATTCTTTTGTTCTTGTTCACGGCCATATTCTTGTTTTTTGGAGAACATATGCACATTGTATGCAGAGAACTGAAAGATGGCTCTATCATCGACAGATACGTAGGCGACAGGCTTAAGTTCAACAACAAGACGATCAGTGTTCAAACAACCATCAAaaattgccAAAATAACATGCCAGTTTACAAAGCCATTGATGGAAAGAATGTTTACGACATCGAGAAAGAACTAAATATCACAAAAttGATCGATATAGACAAACAGCTGGATTCCCTCAATTTCAGTGTGTCAGATCAATCAATCTTGAGTAGCAGCACCAAAAAATCTTTGCAAGATTTGAAAAACTCAAGCATCGATAATATCAATTTCACCAAGTTCTTCAACGAGTTGGATCGAAACATTGTTGCTGTCAATTTGACAAAACTCGCTGATGATTTGAAAAATACATCTTCAAACATTCGAAAAGTCAACACCTCTGATGCTATTAGTTTGTTAAGAACGAACATTGATGATTTGAAGAAACGAGCAAATAACTTGACGAATGTTGCTGATAATGTCCTCAAAGAACTCGAAAAGGCAAATGATTACGTCACGATGACTGCGACAAATGATGTAATGAATTTGATAAAGGATTACACCAAAAGAGTTATTGGTTGGCCTATCCAATTTGTGGATCACATTTTCTCAGAAATAAAAAACAATTTGGCAAGATGCAAGCCAGTGGCTAATGTTTACGATGGAATTGTTAATGTTTTCTTCTGCACTGGAATCGTCCGTAATTTCAATGGATTTTGGCTTGCAATGGGCTGGTGCATATTTTTCTTCCCTTTCGCCATTATATTTGGTGTTAAACTTGCAAAGTATTTCAGAAGGATGCAGATGCTATCTGGCTTTGATTCTGATGGAACGGTTAGAAACAAGAACAAAGTGTATATTGTGTAA

Transcript

evm.model.HiC_scaffold_163.15

Protein

Uniprot

Uniprot term	Description
O43490	Prominin-1 OS=Homo sapiens OX=9606 GN=PROM1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05478	Prominin	Prominin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008795	Family	Prominin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22730	PROMININ PROM PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06532	PROM1, CD133; prominin 1	-	CD molecules	ko04090	deepkoala