Detailed information of evm.model.HiC_scaffold_17.296 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_17:3806080...3893846
NR annotation: XP_047139331.1, laminin subunit alpha-1 isoform X1 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q60675Laminin subunit alpha-2 OS=Mus musculus OX=10090 GN=Lama2 PE=1 SV=2
G5ECE3Laminin subunit alpha lam-3 OS=Caenorhabditis elegans OX=6239 GN=lam-3 PE=1 SV=1
Q16787Laminin subunit alpha-3 OS=Homo sapiens OX=9606 GN=LAMA3 PE=1 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00055Laminin_NLaminin N-terminal (Domain VI)DomainInterproscan
PF15711ILEIInterleukin-like EMT inducerDomainInterproscan
PF00054Laminin_G_1Laminin G domainDomainInterproscan
PF04931DNA_pol_phiDNA polymerase phiFamilyInterproscan
PF02210Laminin_G_2Laminin G domainDomainInterproscan
PF00168C2C2 domainDomainInterproscan
PF00053Laminin_EGFLaminin EGF domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002049DomainLaminin-type EGF domainInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR008211DomainLaminin, N-terminalInterproscan
IPR001791DomainLaminin G domainInterproscan
IPR007015FamilyDNA polymerase V/Myb-binding protein 1AInterproscan
IPR035892Homologous_superfamilyC2 domain superfamilyInterproscan
IPR000008DomainC2 domainInterproscan
IPR039477DomainILEI/PANDER domainInterproscan
IPR008979Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR000742DomainEGF-like domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13213MYB-BINDING PROTEIN 1A FAMILY MEMBERInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003714Molecular Functiontranscription corepressor activityInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0008134Molecular Functiontranscription factor bindingInterproscan
GO:0043565Molecular Functionsequence-specific DNA bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K04850CACNA1C, CAV1.2; voltage-dependent calcium channel L type alpha-1C-Ion channelsko04040deepkoala

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