Detailed information of evm.model.HiC_scaffold_18.111 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_18:1299340...1303188
NR annotation: XP_005989675.2, PREDICTED: BTB/POZ domain-containing protein 1 [Latimeria chalumnae]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q9BX70BTB/POZ domain-containing protein 2 OS=Homo sapiens OX=9606 GN=BTBD2 PE=1 SV=1
Q5E9Z8U6 snRNA-associated Sm-like protein LSm1 OS=Bos taurus OX=9913 GN=LSM1 PE=2 SV=1
O15116U6 snRNA-associated Sm-like protein LSm1 OS=Homo sapiens OX=9606 GN=LSM1 PE=1 SV=1
Gene familySubfamily
Transcription Factors FamilyZBTB
Ubiquitin FamilyE3|E3 adaptor Cullin RING|BTB

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07707BACKBTB And C-terminal KelchDomainInterproscan
PF00651BTBBTB/POZ domainDomainInterproscan
PF01423LSMLSM domain DomainInterproscan
PF08005PHRPHR domain DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR010920Homologous_superfamilyLSM domain superfamilyInterproscan
IPR011705DomainBTB/Kelch-associatedInterproscan
IPR000210DomainBTB/POZ domainInterproscan
IPR001163DomainSm domain, eukaryotic/archaea-typeInterproscan
IPR012983DomainPHRInterproscan
IPR011333Homologous_superfamilySKP1/BTB/POZ domain superfamilyInterproscan
IPR034104DomainSm-like protein Lsm1Interproscan
IPR047575DomainSm domainInterproscan
IPR038648Homologous_superfamilyPHR domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45774BTB/POZ DOMAIN-CONTAININGInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0022008Biological ProcessneurogenesisInterproscan
GO:0000956Biological Processnuclear-transcribed mRNA catabolic processInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan

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