Detailed information of evm.model.HiC_scaffold_18.254 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_18:2746324...2791230
NR annotation: XP_047129982.1, lysine-specific demethylase 6A isoform X1 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O70546Lysine-specific demethylase 6A OS=Mus musculus OX=10090 GN=Kdm6a PE=1 SV=2
O15550Lysine-specific demethylase 6A OS=Homo sapiens OX=9606 GN=KDM6A PE=1 SV=2
P79457Histone demethylase UTY OS=Mus musculus OX=10090 GN=Uty PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02373JmjCJmjC domain, hydroxylaseDomainInterproscan
PF01400AstacinAstacin (Peptidase family M12A)DomainInterproscan
PF00431CUBCUB domainDomainInterproscan
PF00629MAMMAM domain, meprin/A5/muDomainInterproscan
PF21326KDM6_GATALKDM6, GATA-likeDomainInterproscan
PF13181TPR_8Tetratricopeptide repeatRepeatInterproscan
PF00090TSP_1Thrombospondin type 1 domainDomainInterproscan
PF13432TPR_16Tetratricopeptide repeatRepeatInterproscan
PF21322KDM6_C-helLysine-specific demethylase 6/UTY, C-terminal helical domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR035914Homologous_superfamilySpermadhesin, CUB domain superfamilyInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR024079Homologous_superfamilyMetallopeptidase, catalytic domain superfamilyInterproscan
IPR046941Homologous_superfamilyLysine-specific demethylase 6, GATA-like domain superfamilyInterproscan
IPR003347DomainJmjC domainInterproscan
IPR036383Homologous_superfamilyThrombospondin type-1 (TSP1) repeat superfamilyInterproscan
IPR000884RepeatThrombospondin type-1 (TSP1) repeatInterproscan
IPR019734RepeatTetratricopeptide repeatInterproscan
IPR001506DomainPeptidase M12AInterproscan
IPR000998DomainMAM domainInterproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR000859DomainCUB domainInterproscan
IPR006026DomainPeptidase, metallopeptidaseInterproscan
IPR034035DomainAstacin-like metallopeptidase domainInterproscan
IPR048560DomainLysine-specific demethylase 6A/B-like, GATA-likeInterproscan
IPR051630FamilyTranscriptional Corepressor and Histone DemethylaseInterproscan
IPR048562DomainLysine-specific demethylase 6A/B-like, C-terminal helical domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14017LYSINE-SPECIFIC DEMETHYLASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0008237Molecular Functionmetallopeptidase activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0004222Molecular Functionmetalloendopeptidase activityInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0010468Biological Processregulation of gene expressionInterproscan
GO:0031490Molecular Functionchromatin DNA bindingInterproscan
GO:0044666Cellular ComponentMLL3/4 complexInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11447UTX, KDM6A; lysine-specific demethylase 6AEC:1.14.11.68
Chromosome and associated proteinsko03036deepkoala

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