Detailed information of evm.model.HiC_scaffold_18.260 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_18:2889747...2905149
NR annotation: KAJ7380981.1, Hemicentin-1 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O89026Roundabout homolog 1 OS=Mus musculus OX=10090 GN=Robo1 PE=1 SV=1
O55005Roundabout homolog 1 OS=Rattus norvegicus OX=10116 GN=Robo1 PE=1 SV=1
Q9Y6N7Roundabout homolog 1 OS=Homo sapiens OX=9606 GN=ROBO1 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00041fn3Fibronectin type III domainDomainInterproscan
PF13927Ig_3Immunoglobulin domainDomainInterproscan
PF13895Ig_2Immunoglobulin domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003961DomainFibronectin type IIIInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR007110DomainImmunoglobulin-like domainInterproscan
IPR003598DomainImmunoglobulin subtype 2Interproscan
IPR036179Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR036116Homologous_superfamilyFibronectin type III superfamilyInterproscan
IPR003599DomainImmunoglobulin subtypeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46958B-CELL RECEPTOR CD22Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005769Cellular Componentearly endosomeInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0009897Cellular Componentexternal side of plasma membraneInterproscan
GO:0019903Molecular Functionprotein phosphatase bindingInterproscan
GO:0030888Biological Processregulation of B cell proliferationInterproscan
GO:0033691Molecular Functionsialic acid bindingInterproscan
GO:0042113Biological ProcessB cell activationInterproscan
GO:0042609Molecular FunctionCD4 receptor bindingInterproscan
GO:0050859Biological Processnegative regulation of B cell receptor signaling pathwayInterproscan
GO:0055037Cellular Componentrecycling endosomeInterproscan
GO:0070062Cellular Componentextracellular exosomeInterproscan

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