Gene detail

Detailed information of evm.model.HiC_scaffold_182.65 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_182:403680...406986
NR annotation: MCP4484158.1, hypothetical protein [Flavobacteriaceae bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_182.65

ATGACGGAATTTATTACGATTGCGATGTGCAAGGAGCTGCTTGCAGTTCAACAGATGAGTTATGCCAAGATGATCGAAGTTCTCACTGCAGACCTTCGCAACAAAATCAGGTTCATAAAAAATGATATTAATGATCTCAAAGCAAGTGCTCAATTTCAGAGCAATACTATTGACTCTTACAACGTGAAAATAGATTGCATTGAGAAGGAATTAAAACTGATTAAAGACCAACTGGGTAACAGCGATGTGGACCTGATCAATCTTGAGGACAAGGTGGAATACCTGGAGAACAGCAGCCGCCGAAATAACATTAGAATCGTTGGAGTGCCTGAAGCTCCTCAATTTAAGGAGTCATGGGAGGAGAGTGAACAAATCGTCAAAGATAAAATCAACACCCTTCTTGGAATTTCAGAGGATCTCCAAATTGAAAGAGCCCATCGAGTTGGCAAACCGAAAGCCTTCTTCACACGGCCCGACGGGTCAAAGGTCAAAGCTAGGCCTAGGCCCATTGTAGCAAAGTTTCATTCATGGAAACAAAAGGAGTCTGTCTTGAGGGAGGCCAGAGCAAAGAAGCCAGATGGCATAAAGTTTGTCCCTGATCTCAGCCAACGCACACTGGATAAACGTGAAAGATTGGTACCCCAACTACTTGATGCAAGGAGACATGGAAAGATTGTATACTTTGTCCTGGACAAACTTGTTGTGAAAGAGAAAGTGCCTACTGGAGGATTTGGACCAGGATTTGGATCCCCCAGTCATGATGGCCATGAGGCATTTTCACCACCTTATGAACAAGCTGCATCCTCGCCAATACCTGGTGACGGTGCTGATGACAGTGAAATTATAGTTAACATGCAGCATGAAGTTTCTCCTTCTGAGTACAAAATCCTTGCTGATGAGCCTGATGAAGTTCCATGGTTTTGTAAAAGGTGTACTATTGCAGAACGTGAATCAATTTTCACTTTTGGCAcagttgaaaatgaaacactATCAGATTTGTTTGAGCTTGATAAACCTTCTGTTGTTGATTCATTACCGTCATTTGAAATCACCTCCCATCTTACCAACTTGCCTAACCTACAAGACTATGATATTGATGAACAATTGCCTTCTAATATTGACTCTAATTATGTATCAATTCAAGATTTATCTTCTTCTGATACTAACCACACTGATCTCTCTTTCTTACACATGAATATAAGAAGTCTTTCTTGTCATTTTGATGAGCTTCAGACAATGTTGGTTAACCTCAGGTTTTCTTTTGATCttgttgctgtttctgaaaCTTGGGATTCTTTTAAAAGACCCTTAAAAGTCAATGTTGAAATTCCTGGATATACATTTTTTTCCACAAGATCTCAAAGTCAGAATGGTGGTGTAGGTCTTTATATTAAATCGAGTTTAGCTCCCATTCCAAGGTCTGATTTAGCTAGTGACAGTGACGATTTTGAGACAGTTTGGACGGAAATTGAAAATCCTAAagataaaaacattttgatCTGCTGTGCTTATCGTCATCCAAACTCTGACCCTGAAACCTTTAATGAGTACATACAAAATATTTTAGCTAATCCTACCATCATTAAcaagaatgttttcattttAGGTGACTTCAACTTAAACCTACTAAACTATGATTCTCATACACCTACTAAAAACTTTGAAAGCTTTCTTGAAGATTTTAATAACCTTAACTTCGAGTACCTGAATGAGAACATAAATGATGTAAATGCCAAATTTAACAGATTTCTTGATAATCTTAATGATATTGTTAAAAAGCATGCCCCATTGAAGAAACTCACCAAGAAAGAACTCAAATTGCGTAATAAGCCATGGATTAATAGCAGAATTCAAAAGATGATGCGATTACGGGATAAAGCATTGAAAAAACTCAGGAAAAAACCTGATGAAGCAACCAAGCTTTTATATAAACAATTCAGAAACCGTATTGCCATTGAGCTTAAAGAGAAGCTATATGAAGTGTTGTATAATCTCCAGTTTGGTTTTCCTGCTTCTCACTCGATCGATCATGCTTTGATTAGCTTAACTGAATCAATTAAGAATACCATAGATAACAAGAAGTATGGCTGTGGCATCTTCATTGACTTGcaaaaagcatttgatacagTCAATCACCAAATTCTCTTCAGCAAGCTTGAACATTATAGTACCACAGGGATCGGTCCTTGGCCCACTTCTATTCCTCTTatctctctatactaa

Transcript

evm.model.HiC_scaffold_182.65

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF03372	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR004244	Family	Transposase, L1	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11505	L1 TRANSPOSABLE ELEMENT-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003727	Molecular Function	single-stranded RNA binding	Interproscan
GO:0032197	Biological Process	retrotransposition	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan