Gene detail

Detailed information of evm.model.HiC_scaffold_19.34 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_19:241188...244476
NR annotation: MCP4485636.1, hypothetical protein [Flavobacteriaceae bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_19.34

ATGGAACGTCTGTTGGCAAAAAGAATAATCTCTTTCttaaataagaacaaaattatcTATGAGCTTCAGTTTGGGTTTAGAGAAGGGCACTCAACTTTAGATGCACTTATCGAACTTCTGGATAAAATATACTTAAATTTGGATATCAACAATTGTTGTCAAGGTGTCTTCCTTGATCTGTCTAAAGCTTTCGATACCATTGATCACTCgattcttcttcaaaaacttgACTATTATGGCTTTCGAGGGAAAATCCACAATTGGTTCTCTAGTTATCTTTATAACAGACAACAGTATACATGTGTAAATGGTGCTAGATCAGAACTACAAAACGTCAACAAAGGGGTACCTCAAGGATCAGTTTTAGGTCCAATTCTATATACACTTTATGTTAATGACATGCCTAATGCTGTCTCCACAAAACCACGACTTTTTGCAGATGACACTTGTATATTCAGTTTCAACGAAAATACTACGTTGCTTTCAAACTCAATGAACACCGAGCTTGAAAATCTTTCTGAATGGCTTAAAGCAAACATGTTCTTGGTAAATACAAGCAAAACAAACTATAGTATGTTTGTACCTTctaaaaatactgaaataagCACAACGAAGATTAGAATGGGAGATGAACTAGAAAAGACTAATGAAATCAAATATCTAGGCGTCAAAATTGACGAGAAACTTTCTTGGGTCCCTGATATTAATAAAGTTAAAAATGACATTGTCAAATTCTcttctatttttgcaaaacttCGATATTTTGTTCCAAAAGAATGCCTACTTACTCTATATGATTCTCTAGTTACATCTAAAATTGGATATGCTTTAAAAGTTTTTGGTGtagcaaaaaataaatatatgaaAGAACTTCAAACCCTTCAGAACagaattctaaaaataatacattttaaagATCATAGATTTTCAACTAATCGCTTACACATACCTCTTCTTGGAGTTTTGCACATATCTCTGAATGCACAGGAGAATGTTGTAAAAATGTACCATCCATTAATGAAATTCGTTTATGAGCATATCTTTCCCAAAAGCAAGCTTGCTGAAAAGCCAATTCCATGGCAAGCAACTCTTTTGATGGAAATTCTTTATGGTGGGTGGACACTCATTCGGTCTTCAGTTTTAACTGTGTTTGCTTATTGGAGAGATCCTGAATATGGTGCTCTATTAAACTGGTTGGATAATTATTTGCCTTTGGTCCTTTCAATTTATTCAATCATTTTCAAATCTAACAAATTCACAGAATATTTTCTTTCAGTTATAAGAGTCTGGATAATGTTTTACTGCTTTCGCAGAAGTCATTATGATAAAGCTCCACTCATATGCTTATCAAATGTTATCTACTGGCAGAATCCTGATATATTTAAAATCATAAGAGAGAACATAACAATATTTGATGAGTATGCTGTCGAAAATGTTCATTCTATTCTTAGAGCACAGACAAAATCATATTTTTCAACAGAACAGCTACGGACTAAGGCTAAGAATGTGTTTGCATCAAAATATAAGCAACAAAACTTTAGAAGTGCATTTACACCTTCAAAGTATTACTCGTTTTCTTGCAATCAGTTGAATTCCCTCAAAATCAAAGCTGCTAGCctcttaaaatctttttttgtAGACAAAGCAAATTCACTTGTGAATGGGCACAAATCTTCTTGCCCTTTATGTAAGTCTTTTATGAAAAAAGAGATATCCAGATTAGCGAAGATAGCAAAGCAGGGTGTTATTTCTAAAGCTGACGACATGGCAGTAGAAGGAGAGACTGAAGGAGCTGAGGAGAATGATGAAGATCCAGCTGTTCTTGACACCACAAACTCTGATCTTTCCATCCAGCAGAATGAGCTCATAAAAGAGATATTAGATCTACAGCCTCCAAAATTAACAGCAATCTTTATACCAGTCTCCGTTCCAGTAAACCATCATACAAAGGTCCCCACTGTCAACTCTGTAGCCATGAAGTAA

Transcript

evm.model.HiC_scaffold_19.34

Protein

Uniprot

Uniprot term	Description
Q9NBX4	Probable RNA-directed DNA polymerase from transposon X-element OS=Drosophila melanogaster OX=7227 GN=X-elementORF2 PE=3 SV=1
Q95SX7	Probable RNA-directed DNA polymerase from transposon BS OS=Drosophila melanogaster OX=7227 GN=RTase PE=2 SV=1
P21328	RNA-directed DNA polymerase from mobile element jockey OS=Drosophila melanogaster OX=7227 GN=pol PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052560	Family	RNA-directed DNA polymerase, mobile element	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR36688	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03860	PIGQ, GPI1; phosphatidylinositol N-acetylglucosaminyltransferase subunit Q	-	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	ko00563	deepkoala