Gene detail

Detailed information of evm.model.HiC_scaffold_197.17 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_197:243540...280537
NR annotation: XP_046859639.1, LOW QUALITY PROTEIN: outer dynein arm-docking complex subunit 2-like [Xenia sp. Carnegie-2017]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_197.17

ATGGGTCTTACTAGCTTATATTTAATTTATGTCATCATTGGATGCGCTGCGTTAGAGGCATCCTGCATTGTTAAGCATTTTCCTCGGAGGTACGAAAAAGAGCTACTCGAAGATTTACTATCAAACTACAGCACGTATTACCGGCCTTCGCAATCCAGCAATGCTTCTGTTGATGTTTATTTCAACCTTAAATTGATCAAAATTGTTTACTTACAAATCAAAGAGCAAGTCATGGTTGTGGATGCAATGGTTACCTTAAAATGGACGGATCCTCAACTGGCTTGGAACCCAAAACAGTGGAACAGCACTGAGACATTGATCGTTCCTGCCGAGCTAATCTGGACCCCAGATATCGCACTGCACAACACGGCTGCAAAATCAAGAAAGTCAACTACGGATGTATTGAAAGCCAATACCATTATCTCACATACTGGTAAAGTAGGTTGGTCATCACCAACTTGTTTCGAAGCTTCTTGCAGTATCGATATTAAATGGTTTCCCTTCGATACGCAAACGTGTAAACTGACTTTCGGCTCTCTTTCCTATACTAAGAGCAAGCTGGAGTTCCAGTTTGTAGAACATGCTTCAGACGTAGAGGCTGTACAAAACAGCGTACATTACTCAAGTGGCGAGTGGAAATTGATGCAACATTGCTTTTTTCTTGACAGCAAAGACAGAGGAAAAACCAATAAACAGCAGgcgaaaaaagaaggaaaaacaaaggatcACAAAGAACCATCGCAGAAATGGAAGCAACTCAACCTTGTAGCTGAAATTCCTGATGGCACAGAGAGGAAGACCCCGCCTATACATAACGATGGTTTCAGTGAAAGTTCCTCTGAAagcgaagaggaagaagaaacaCAAGAACGAAGACAGGAGTCAAATGCTGATTTGCCATCTGAATACTGGCAAATTCAGAAGCTTGTAAAATATCTCAAGGGTGGCAATCAGACAGCAACGATTATTGCACTGTGTGCATTACGCGACTTCAATTTGGCTCAAGAAACATGCCAACTTGCTATCAGAGATGTCGGAGGGCTTGAAGTTTTCATTAATCTTTTGGAaactaatgaaataaaatgcaagATTGGCTCTTTGAAAATTCTGAAGGAAATATCAATCAACACACAGATTAGAAAAGCCATTGCAGATCTTGGTGGGCTGCAGACGATGGTTAAAATTCTACAATCACAGAACAAGGAGTTAAAATGCCTTGCCGCAGAAACAATCGCGAATGTCGCGAAATTCCGACGGGCTAGAAGAACTGTGAGAAAATATGGTGGCATACGTAAATTGGTAGCGCTGTTAGACTGTGGCTTGGTTTCCACAGCAACTGAGATTGACATAAGTGTAGCCCGCGCAGGCGCAATGGCACTTTGGAGTTGCAGCAAAAGCACCAAGAACAAACATGCAATAAAAAAGGCCGGTGGTATTCCGTTGCTTGCAAAGTTGCTGAAGTCCGACAATGAAAGCATGTTGATACCAGTGGTTGGCACTTTACAAGAGTGTGCATCAGAGCCAAGTTATCGTCTTGCCATTCGAACTGAGGGGATGATAGAAGATCTAGTCAGAAATCTAAAAAGTAATGATCAAGAACTCGAAAGACATTGCGCAAGTGCTATATTCAAGtGTGCTGAAGATTTCGAAACACGTAAACTTGTGCGAGAATATGGTGGACTAGACCCCCTGGTTGCTCTACTGGCCAACGTTGAAAACAAGGATTTACTCGCAGCAGCCACGGGGGCTATCTGGAAATGCGCTATCAGCGAAGAGAATGTCCTTCGATTTCAAGAGCTAAAAGCTATCGAGCAGCTTGTAGCATTGCTAAATGATCAACCTGAAGAGGTGCTCATTAACGTTGTTGGTGCTCTCGGGGAGTGCGCTAAGATACCAGCGAATCGGCTTACAATCCGCAAAGCTGGCGGAATCTCACCGATGGTCAACCTTCTAACAGGAACGAATCAACAACTTCTTGTAAATGTCACCAGAGCTGTAGGACAGTGTGCCATGGAGGCAGAAAATATGGCAATCATTGACCGTCTGGATGGAGTTCGGCTGTTGTGGTCATTGCTCAAGTCTGCTAACCCCCAAGTTCAGGCCAGTGCTGCTTGGGCTATTTGTCCTTGTATTGAAAATGCTAAGGATGCTGGTGAAATGGTCAGGTCTTTCGTTGGAGGTTTGGAGCTTATTGTCAGTCTTCTAAAGTCGGAAGATAGAGAGGTTCTTGCAAGTGTTTGTTCTGCGATTGCTAATATTGCAAAAGATGAAGAGAATCTCGCTGTTATTACTGATCATGGGGTGGTACCGATGCTTGCTCGCTTAACAAATACGACTGACGACAAACTGCGACACCACTTAGCAGAGGCCATAGCAAGATGCTGCACATGGGGTAACAATAGAGTATCATTTGGTCAGGCAGGAGCTGTCGCCCCTCTGGTTCGCTACCTCAAATCAAAGAACCTCGATGTACACAGATCTACTGCGAAGGCGCTTTATCAATTGTCGCGTGATCCCGACAACTGTATTGCCATGCACAGCAGTGGTGTAGTGAAgGGATTTTGTTTGAATAAGAGGGATTTCCAGTTAACCAATCGAAATTCAGCTTTGAAAATGGTACAATTTGATTGGTGCCGCCTCTATCTGAGgaacgctaccaccaccacaaccagccctacaaccatcacctcgaccacccctatcaccaccaccggaaccaccctacaaccatcacctcgaccacccttatcaccaccaccacaactaccctacaaccatcactacgatcacccctatcacaaccaccacaaccaccccttcagcaccacaaccacctctatcaccaccaccatacccaccatacaaccacaatcacccctaccaaccagcatcatgatcatcgtgttcatcaacatcatcatcataaccaccaccattatcatcataatcattatcgtcatcgttgtgcataccgatgaacatctttcatcatttgaccgaaatagctatattcaaccagagtcgttcttcgaacatgcccatagggcccctatgttcttGTTTGACTGTCGTGTTTGGTAA

Transcript

evm.model.HiC_scaffold_197.17

Protein

Uniprot

Uniprot term	Description
E1B8W3	Outer dynein arm-docking complex subunit 2 OS=Bos taurus OX=9913 GN=ODAD2 PE=1 SV=3
B2RY50	Outer dynein arm-docking complex subunit 2 OS=Mus musculus OX=10090 GN=Odad2 PE=1 SV=1
Q5T2S8	Outer dynein arm-docking complex subunit 2 OS=Homo sapiens OX=9606 GN=ODAD2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00514	Arm	Armadillo/beta-catenin-like repeat	Repeat	Interproscan
PF02931	Neur_chan_LBD	Neurotransmitter-gated ion-channel ligand binding domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000225	Repeat	Armadillo	Interproscan
IPR006201	Family	Neurotransmitter-gated ion-channel	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR006202	Domain	Neurotransmitter-gated ion-channel ligand-binding domain	Interproscan
IPR036734	Homologous_superfamily	Neurotransmitter-gated ion-channel ligand-binding domain superfamily	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR018000	Conserved_site	Neurotransmitter-gated ion-channel, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46241	ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0004888	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0005216	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0034220	Biological Process	monoatomic ion transmembrane transport	Interproscan
GO:0005230	Molecular Function	extracellular ligand-gated monoatomic ion channel activity	Interproscan
GO:0006811	Biological Process	monoatomic ion transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24125	ODAD2, ARMC4; outer dynein arm-docking complex subunit 2	-	Cilium and associated proteins	ko03037	deepkoala