Detailed information of evm.model.HiC_scaffold_2.246 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_2:3190456...3214566
NR annotation: CAH3179189.1, unnamed protein product, partial [Porites evermanni]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q1RMT1General transcription and DNA repair factor IIH helicase/translocase subunit XPB OS=Bos taurus OX=9913 GN=ERCC3 PE=2 SV=1
P19447General transcription and DNA repair factor IIH helicase/translocase subunit XPB OS=Homo sapiens OX=9606 GN=ERCC3 PE=1 SV=1
Q60HG1General transcription and DNA repair factor IIH helicase/translocase subunit XPB OS=Macaca fascicularis OX=9541 GN=ERCC3 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04721PAWPNGase C-terminal domain, mannose-binding module PAWDomainInterproscan
PF16203ERCC3_RAD25_CERCC3/RAD25/XPB C-terminal helicaseDomainInterproscan
PF00168C2C2 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR008979Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan
IPR035892Homologous_superfamilyC2 domain superfamilyInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR006588DomainPeptide N glycanase, PAW domainInterproscan
IPR032438DomainERCC3/RAD25/XPB helicase, C-terminal domainInterproscan
IPR038680Homologous_superfamilyPAW domain superfamilyInterproscan
IPR000008DomainC2 domainInterproscan
IPR050615FamilyATP-dependent DNA HelicaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11274RAD25/XP-B DNA REPAIR HELICASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006516Biological Processglycoprotein catabolic processInterproscan
GO:0000112Cellular Componentnucleotide-excision repair factor 3 complexInterproscan
GO:0005675Cellular Componenttranscription factor TFIIH holo complexInterproscan
GO:0006367Biological Processtranscription initiation at RNA polymerase II promoterInterproscan
GO:0043138Molecular Function3'-5' DNA helicase activityInterproscan
GO:0097550Cellular Componenttranscription preinitiation complexInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K17701SIPA1L1, E6TP1; signal-induced proliferation-associated 1 like protein 1-Rap1 signaling pathwayko04015deepkoala

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