Detailed information of evm.model.HiC_scaffold_2.333 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_2:4273006...4309672
NR annotation: CAH3121168.1, unnamed protein product [Porites lobata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q0P4U8SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Xenopus tropicalis OX=8364 GN=smarcal1 PE=2 SV=1
Q498E7SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Xenopus laevis OX=8355 GN=smarcal1 PE=2 SV=1
B2ZFP3SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Danio rerio OX=7955 GN=smarcal1 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00176SNF2-rel_domSNF2-related domainDomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF04084ORC2Origin recognition complex subunit 2 FamilyInterproscan
PF00013KH_1KH domainDomainInterproscan
PF07443HARPHepA-related protein (HARP)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036612Homologous_superfamilyK Homology domain, type 1 superfamilyInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR049730DomainSNF2/RAD5-like, C-terminal helicase domainInterproscan
IPR004087DomainK Homology domainInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR000330DomainSNF2, N-terminalInterproscan
IPR007220FamilyOrigin recognition complex, subunit 2Interproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR010003DomainHARP domainInterproscan
IPR038718Homologous_superfamilySNF2-like, N-terminal domain superfamilyInterproscan
IPR004088DomainK Homology domain, type 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45766DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBERInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0031297Biological Processreplication fork processingInterproscan
GO:0048478Biological Processobsolete replication fork protectionInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0140658Molecular FunctionATP-dependent chromatin remodeler activityInterproscan
GO:0000808Cellular Componentorigin recognition complexInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006260Biological ProcessDNA replicationInterproscan

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