Detailed information of evm.model.HiC_scaffold_2.454 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_2:5580159...5618222
NR annotation: XP_002157821.2, contactin-associated protein-like 5 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
B8UU78EGF and laminin G domain-containing protein (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
P53708Integrin alpha-8 OS=Homo sapiens OX=9606 GN=ITGA8 PE=1 SV=3
P12080Integrin alpha-PS2 OS=Drosophila melanogaster OX=7227 GN=if PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08441Integrin_A_Ig_1Integrin alpha Ig-like domain 1DomainInterproscan
PF02210Laminin_G_2Laminin G domainDomainInterproscan
PF01839FG-GAPFG-GAP repeatRepeatInterproscan
PF20806Integrin_A_Ig_3Integrin alpha Ig-like domain 3DomainInterproscan
PF20805Integrin_A_Ig_2Integrin alpha Ig-like domain 2DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR028994Homologous_superfamilyIntegrin alpha, N-terminalInterproscan
IPR001791DomainLaminin G domainInterproscan
IPR032695Homologous_superfamilyIntegrin domain superfamilyInterproscan
IPR013649DomainIntegrin alpha, first immunoglubulin-like domainInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR000413FamilyIntegrin alpha chainInterproscan
IPR013517RepeatFG-GAP repeatInterproscan
IPR048286DomainIntegrin alpha, third immunoglobulin-like domainInterproscan
IPR013519RepeatIntegrin alpha beta-propellorInterproscan
IPR048285DomainIntegrin alpha, second immunoglobulin-like domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23220INTEGRIN ALPHAInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0007155Biological Processcell adhesionInterproscan
GO:0008305Cellular Componentintegrin complexInterproscan
GO:0005178Molecular Functionintegrin bindingInterproscan
GO:0007160Biological Processcell-matrix adhesionInterproscan
GO:0007229Biological Processintegrin-mediated signaling pathwayInterproscan
GO:0009897Cellular Componentexternal side of plasma membraneInterproscan
GO:0033627Biological Processcell adhesion mediated by integrinInterproscan
GO:0098609Biological Processcell-cell adhesionInterproscan

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