Detailed information of evm.model.HiC_scaffold_2.455 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_2:5621707...5630195
NR annotation: AHX03093.1, sine oculis, partial [Aurelia sp. 1 NN-2010a]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q6NZ04Homeobox protein six1b OS=Danio rerio OX=7955 GN=six1b PE=1 SV=1
A1YER0Homeobox protein SIX1 OS=Gorilla gorilla gorilla OX=9595 GN=SIX1 PE=3 SV=1
Q15475Homeobox protein SIX1 OS=Homo sapiens OX=9606 GN=SIX1 PE=1 SV=1
Gene familySubfamily
Transcription Factors FamilyHomeobox

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00046HomeodomainHomeodomainDomainInterproscan
PF16878SIX1_SDTranscriptional regulator, SIX1, N-terminal SD domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR017970Conserved_siteHomeobox, conserved siteInterproscan
IPR001356DomainHomeobox domainInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR031701DomainHomeobox protein SIX1, N-terminal SD domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10390HOMEOBOX PROTEIN SIXInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005667Cellular Componenttranscription regulator complexInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K15614SIX1; homeobox protein SIX1-Transcription factorsko03000deepkoala

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