Gene detail

Detailed information of evm.model.HiC_scaffold_2.556 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_2:6532192...6541274
NR annotation: XP_031563696.1, potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q9TV66	Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 OS=Oryctolagus cuniculus OX=9986 GN=HCN4 PE=1 SV=1
O88703	Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 OS=Mus musculus OX=10090 GN=Hcn2 PE=1 SV=1
Q9JKA9	Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 OS=Rattus norvegicus OX=10116 GN=Hcn2 PE=1 SV=4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00520	Ion_trans	Ion transport protein	Family	Interproscan
PF00027	cNMP_binding	Cyclic nucleotide-binding domain	Domain	Interproscan
PF08412	Ion_trans_N	Ion transport protein N-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005821	Domain	Ion transport domain	Interproscan
IPR000595	Domain	Cyclic nucleotide-binding domain	Interproscan
IPR051413	Family	Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel	Interproscan
IPR014710	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR013621	Domain	Ion transport N-terminal	Interproscan
IPR018490	Homologous_superfamily	Cyclic nucleotide-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45689	I[[H]] CHANNEL, ISOFORM E	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005216	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811	Biological Process	monoatomic ion transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0003254	Biological Process	regulation of membrane depolarization	Interproscan
GO:0005249	Molecular Function	voltage-gated potassium channel activity	Interproscan
GO:0035725	Biological Process	sodium ion transmembrane transport	Interproscan
GO:0071805	Biological Process	potassium ion transmembrane transport	Interproscan
GO:0098855	Cellular Component	HCN channel complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04955	HCN2; hyperpolarization activated cyclic nucleotide-gated potassium channel 2	-	Ion channels	ko04040	deepkoala