Gene detail

Detailed information of evm.model.HiC_scaffold_2.574 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_2:6720057...6740591
NR annotation: EDO43602.1, predicted protein [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_2.574

ATGCAGTTTACAAAAGATTCAGAGCATAATATTCACAGTATGGACAATCAAAATGAAACTTGGCTAAGTGAAAAAGGAGCATGGCTGACTTATTTCATCCTTGTGGTATTcatgcatcttgttcttctaaGTGTTCCATTCTTTGATACTGCAACAGCCTGGACCATGACCAATGTCATTCATAATCTGGGGAACTATGTGTTATTACATCACGTCAAAGGAGCTCCATTCCAAACATTTGATCAAggtcaagcaagaaaattaactCATTGGGAGCAGATTGATCATGGAGAAATGTATACAATGACAAGAAAGTTTCTTACACTTGTACCCGTTCTGCTatctgaaaaaacagcaaagaatATCACCTTCAAAATGGTAAGTTCACAAGTTGTGGTTGCATCATCGCAGCCATCATCTTCTGCTGAGACTGATGGGAGTGGAAGAAGACGGTTCACTGAGTCAAGGACAAATGATCCATATGGTGGTGAATCTCAATCAAGAGAGAGCAAATCAGAGTATGATCGGGGTTCATCAGAAAGAATTAGAAGTGAAAAATCAAGGAGGGATGATAGGGATAGGGACCGAGATAGAGACAGAGACAGAGATAGGGACAAAGAGAGGGACAAAGAGAGGGACAGAGACGGAAGGGCAAGATATGATGATGGATCTGAGAGAGGAAAGGACAGTAGATCGTCATCACATAGAGAAAGAAGACATGgggattatgatgatgattcaaGAAAGGATGACAGGAGATCTGATTCCAAACATCGACATAAACATGataagaaaagcaagaaaaaacataaacatagatcACGATCAAGATCAAAAGAACGATCAAGCAAAAAAGATGATAGAAAACGaaagaatgaaaatgatgaatCTTCAAAAGAAACCAAGATCAGaaaaacagaagaacaagaagaagaagaacctgCTCCAATAAAGAGAGAGCCTATTTCACTTGAAGAGCTTATCTCAAAGAGAGAAGCTGAAAAGAAAGCCCAGGAGAAGCCAAAGTTTTTGACAAAAGAAGAAAGAGCAGCTGAAGCTTTGAGGAGAAGACAAATGCAAGTTGAAGAACAAAAAAAGCAGTTAGAGGAAAGTAAAAAAATGAGAGAAGATTATTTAAAGGAAGCTGATCATTCCAGAGACGATTGGGATCGAGATCGATACAGAGACAGAAGAGGGAGGGACGGCGATAGAGAACGAAGAAGAGACAGACATGCGTCACCAGAAAAACAGAATGATGCAAATAAAGAGTCACAAGATGTAAcgataactaggaatcaggtaatcagtctacttCAGGCTCGCTACCTTGGAATTGTAAAGAAGAAGCGTAAAATTAGAAAATTGAATGATCGCAAATTTGTATTTGATTGGGATGCTGGAGAAGATACATCGAATGATTACAATCCATTATACAGTGAAAAACACCAGATCCAGCTGTTTGGAAGGGGAAATATTGCTGGAATCGATATTAAGGCTCAGAAAAAAGGTCAGTCACAGTTTTATGAAGATCTGATGGAAAGACGAAGGACGGATACAGAAAAGACAAGTGCAgtAAAAAGGATTAAGACTGCTGTAGATAAAGAAATCGAAAAAGAATACAAAGAAAGACATTGGACTAAAAAGAAATTATCTGAAATGATGCCACGAGATTGGCGTATCTTTAGAGAAGATTTCCATATTACGTGTAAAGGAGGGAACATTCCTAGTCCAATTCGATATTGGAAAGAAGCAAACCTTACACCAGATATATTGGATATCATCGACAGTCTCAATTACAAGGATCCAACTCCAATCCAGAGGATGGCTATTCCAATTGGACTTCAGAATCGAGATATTATTGGTGTGGCAGAAACAGGTAGTGGTAAAACAGCAGCATTTGTTATTCCATTGCTTGTTTGGATCATGAGTTTGCCTGCTTCGGAAAGGGATACTGGTGACCAAGGTCCTTTTGCTATTATTCTTGCACCAACCAGAGAATTAGCTCAGCAGATTGATGAAGAGACACAAAAGTTCTCTAAAAAGCTTGGAATAAGAACGGTCAACATTATTGGAGGACTTTCAAGAGAAGAACAAGGCTTCCAGTTACGTCTTGGATGCGAGATTGTTATTGCCACCCCAGGAAGACTGATCGATGTTCTTGAAAATCGTTATTTGGTTCTCGGACAATGCTCATATGTTGTTCTCGACGAAGCAGACAGAATGATCGATATGGGTTTCGAACCGGACGTCCAAAAGATATTAGAGTTTTTACCAGTTTCAAATGTAAAACCGGACACTGAAGATGCTGAAAATCCTGAGTTACTCACGACGAATATGTCCACAAGAAACAGATTCAGACAGACTGTCATGTTCACAGCAACCATGCCTACTCAGGTTGAGAGACTTGCTCGGGCTTACTTGAGgCGCCCTGCTGTAGTTTACATTGGTTCTGTCGGCAAACCTGTTGAAAGAGTAGAACAACGCGTGATGATTCTgaaggaaaatgcaaaaaaGAAGAAGCTTGTTGAAATTCTCGGTGCTGGCATTGACCCGCCTGTTATCATCTTTGTCAATCAGAAAAAGGGTGCTGATGTGTTGGCAAAATCGCTGGAAAAAATGGGATACAAGGCAACAACATTACATGGAGGCAAAAGTCAAGAACAAAGAGAATTCGCGCTGAGCTGCTTGAAGGCTGGAGAAAAAGAAATTCTAGTAGCAACCGATGTTGCCGGACGTGGTATTGATATCAGAGATGTCTCTCTCGTGCTGAATTATGATATGGCGAAGACAATTGAAGATTATACTCACCGTATTGGACGAACCGGCAGAGCTGGCAAGAATGGAATCGCTGTTTCATTTTGTACCGAAGATGATTCGCATTTATTCTACGATTTAAAACAACTTGTTCTATCAAGTCCGGTAAGATTTTGTACATTTCTGGTAAACGCTTAA

Transcript

evm.model.HiC_scaffold_2.574

Protein

Uniprot

Uniprot term	Description
Q9BUQ8	Probable ATP-dependent RNA helicase DDX23 OS=Homo sapiens OX=9606 GN=DDX23 PE=1 SV=3
Q5RC67	Probable ATP-dependent RNA helicase DDX23 OS=Pongo abelii OX=9601 GN=DDX23 PE=2 SV=1
Q5BCU6	Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=prp28 PE=3 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF04061	ORMDL	ORMDL family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR050079	Family	DEAD box RNA helicase	Interproscan
IPR007203	Family	ORMDL family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47959	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0000027	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0005789	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12858	DDX23, PRP28; ATP-dependent RNA helicase DDX23/PRP28	EC:5.6.2.7	Spliceosome	ko03041	deepkoala