Gene detail

Detailed information of evm.model.HiC_scaffold_2.590 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_2:6889041...6913547
NR annotation: CAH3175366.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_2.590

ATGGCAACATGTAAATTTCATACACTGCAGACGAATACACATATTCTCATTGCCAATCTTGCAATCTCTGATATCCTCATTGCATCACTTGCAGCGCCTCTTCGACTCGTCGATCTTTCCGGCAGTAAATGGTCGAACAAGATTGATAACTGCCGAGTAATAATTACCCTTACGTCTTTCTTCTGCAATGCTTCTGTGCTGAATCTCACCAATCATTATATCATTTTACCCTATGCTGGATATGGTTGGATCGACAATGGAAACAACTCAACGAATGGGATCGTTGAAGTCTGCAGATATCTGACAGTTCTTGATAAATATTACGTACTATTCGTGTTTATAACTGCCGTTTTTGTGCCATTCCTAATCATGGTCATTTCATATATTTATATACTTCGTGTTGCAATTCGTCATTTGAAAAGAATTTCAGCCGTTGAAGTCAGCATCAAAAGAGCTGTACATGCTAATCAAGAAGCAACGACAAACCAAGAAATAGAAACTCTTCCATCTACGATAAATAGAAATACCACAAGAAATCGAccaagaaacaaaacaaagccAACAACATACAGAGCTTATTTATTCATGAAGGAACTCAAGGCAGCCAAAATGGTAGCTATCGTTATCGGCTTATTCGTTATCTGCGTCGTCCCTATCGTTCTCGTGGACATTGCTGAGATAGCATGTGGATACCCTTGTGCTCCAAAATGGATCGTTCTTTGTGGTTGCGGTAACAAAATTGCTGTATTCAGCATCAAGTCGAGACAGGTTGTACGCAAACTTGAAGGTCATGGATCAGACATTTTGGACTTCTATTTCAGAGCAAAAAATCCCCTTCAGGTGATTTCTGCAGCTGAAGATGGTGAAGTAATCATCTGGGATTACACAGATGGGACCATTGTAAAGaggctttcAGTGCAAGGTCCAATTCATTGTTTCCTAGTGGACCCTAAAGATGATGATGTCATTTATGTGAGCAAGGAAACGAAACAAGATTCTCGTGATGGAATAAGTTTGATGAGGATAGATCTAAATGTCACcaaaaagaaagataaagacAAACTCTGCCATGACACTATTAGTTCGGTTGGATTTGGCTCTAAGATGGTAGCAATCAGCAGAGAGGGAGAATATGTAGTttcaataaaaagaaaaagattgatAATATATTCAAGGATAGAAAAGAAAGTAAGAAGCTATACTCATGGTTATGACAAGTTCACATGCATTGCATTTCATCCAACAAAACTAATGATTGCGACTGGGGACTCCAAAGGAAAAATAGTTTTATGGCAAGATTttgagggtttcaaaacaccTATGACAGCTGAATTACATTGGCATGCTCATGCAGTTAAAGACCTGGCCTTCACAAATGATGGTTTATACTTAGTATCAGGTGGAACTGAAGCAGTTCTGGTCACATGGCAATTAGAAACATTAGAAAAAGATTTTATACCGAGACTTGGCGCTCCAATTAAGCATTTATCGATTTCTGATGATGATACATTGTATGCCATTGGCCTCTCTAATAACTCTGTAAAGATCATCTCATCAGTTGACAAGAAGCTCCACTGTGCATTGAGAGGATTAGCAGCCGgACATTGCACTTCAGCTCCTATGAATTACGACCCAAGAACAGATAAACTTGTACTGCCTGGATCTCCTGCTGGTCGTCTGCAATTCTATGACCCAAACCAAGACTCTGTTTCTTTAATTctGGATGTAGTTGGACAGAACTATTTGTCTGGGATCAATACAAAAACAGCTcacaatacagaaatacaaCATTATGATTTCAGTTATGACGGAATGTGGCTCGCTACAGTCGAGAAAGGAAGTTTTGAGTTGATCCCTGATGAAGTAAAACTCAAGTTCTGGTATTTTGATGTTGGTACCCAAAGATACAAGCAAAACACGGTGGCTGACCCACCTCATGAATATGACATAGTAACACTGAAGATGAGACCCAAACCAGAATCATCCATCTTTGATCATCTTGCTGTAACGACTGATTGCTCTGGTAGATTCAAGATCTGGACATTAAATTCGAATGACAATGAAGAATCGCATCCTAGTACTCAAAGAACCTGGTCCTGCCATGCTGTTTGTTACTATGGAAATGGTCCCTGTGGaaaagcctcgttttcagaaGATGGTTCACTGCTTGCTGTTGTTTATGGAAAGACCATAACAATTTGGGATTCAGAAACTGGAGAAATGAAAACAAGTTTATACAGTCCTGTACAAAATGAGACACTCAGTGACATAGTATTTGGTAGTGGTTCAGCTGCTGCATACATGATGGCAAGAACTGATCATTATCTCATCTGTTGGAATCTTTTAACTTGTTCTGTTTGGTGGAGTTTAGAAGCTAATGTCACGTGCTTAGCTGCCGACAAATTCTCGGGATTATTCGCTGTTTTTGCTACGTTTTCAAAGGAGAAAAACAAAGTATACTTCTTTGAGCCATCAAGCCCCAAACCTATCGGTGATGTGCGTATTCACAATGAAAACGTATTATCTGCTGttttcactgacaaaatctccGATGTAGAAATAAAATGCAAGCCAGTTGGAATGCTGTATTTTATTACTGATCAAAAGAATATCTACAAAGTATCAGCATCACAAGAAGGTCAAGAGAGAGACGAAAATGCGGAGATGTCTGAAGAAACAGTTCAGTCGGAATTCGAAAAAATATTTGGATTTAATAAAGatAAATCAATAGACGATGATGCAAAGACCAATACTCAATTCAAGAGTGATGAGATTCCTTCGTCGCAACTCGTCAGAAAGATTCTGGCAACTCCTTCACATGTTTTGCCTTCTGTTTCAACATTATGTTCGTCATTCTTCCAATCCTTATCCCTTGCGCAACAGTCAGCTGAAAGccaagaagaagatgatgaccaTGATCAAACAAAAGatgatagtgatgatgacagcagtgatgatgatggtgataaacctcaaaagaacatttcaaaagCAGATCTCAGTACCACTATCCAAAATGACGAATCAGTGACTAAACCAGTAATTAGCAACACTCATAATCAAACTGACTTTTGTTGGCTTTCTAATTTCGTAAAAGAAAATTACAAATCGCATACATCACTCGAATGGAGTACTTTTAATGACAATCCTTTGTCTGATGAGCAACCTTTCTTCAAATATGCTATTTCTGTCTGTTACATGATTAAGAATGTGAGTAGAAATCAGAAGAGCAGGGAGTACATCAGGTTGGCTTGTAGCTTCTCTTCACAACTGGTCGATGAAGGTGTCAAAATGTGCTCCACATGA

Transcript

evm.model.HiC_scaffold_2.590

Protein

Uniprot

Gene family

Uniprot term	Description
Q7ZVR1	WD repeat-containing protein 75 OS=Danio rerio OX=7955 GN=wdr75 PE=2 SV=2
Q6DFC6	WD repeat-containing protein 75 OS=Xenopus laevis OX=8355 GN=wdr75 PE=2 SV=1
Q3U821	WD repeat-containing protein 75 OS=Mus musculus OX=10090 GN=Wdr75 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00001	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000276	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR017452	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44215	WD REPEAT-CONTAINING PROTEIN 75	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004930	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0045943	Biological Process	positive regulation of transcription by RNA polymerase I	Interproscan
GO:2000234	Biological Process	positive regulation of rRNA processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14552	NAN1, UTP17, WDR75; NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)	-	Ribosome biogenesis	ko03009	deepkoala