Detailed information of evm.model.HiC_scaffold_2.599 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_2:7007761...7038263
NR annotation: EDO43602.1, predicted protein [Nematostella vectensis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9BUQ8Probable ATP-dependent RNA helicase DDX23 OS=Homo sapiens OX=9606 GN=DDX23 PE=1 SV=3
Q5RC67Probable ATP-dependent RNA helicase DDX23 OS=Pongo abelii OX=9601 GN=DDX23 PE=2 SV=1
Q5BCU6Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=prp28 PE=3 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04061ORMDLORMDL family FamilyInterproscan
PF00270DEADDEAD/DEAH box helicaseDomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR007203FamilyORMDL familyInterproscan
IPR011545DomainDEAD/DEAH box helicase domainInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR000629Conserved_siteATP-dependent RNA helicase DEAD-box, conserved siteInterproscan
IPR050079FamilyDEAD box RNA helicaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47959ATP-DEPENDENT RNA HELICASE RHLE-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005789Cellular Componentendoplasmic reticulum membraneInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12858DDX23, PRP28; ATP-dependent RNA helicase DDX23/PRP28EC:5.6.2.7
Spliceosomeko03041deepkoala

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