Gene detail

Detailed information of evm.model.HiC_scaffold_2.606 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_2:7094098...7096759
NR annotation: AAD32575.1, Scox-1 homeodomain protein, partial [Cassiopea xamachana]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
P21523	Homeobox protein LOX2 (Fragment) OS=Hirudo medicinalis OX=6421 GN=LOX2 PE=2 SV=1
P15860	Homeobox protein H90 (Fragment) OS=Apis mellifera OX=7460 PE=3 SV=1
Q9IA12	Homeobox protein Hox-D8 OS=Heterodontus francisci OX=7792 GN=HOXD8 PE=3 SV=1

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR001356	Domain	Homeobox domain	Interproscan
IPR046333	Family	Homeobox protein Hox-A10/abdominal-B-like	Interproscan
IPR020479	Domain	Homeobox domain, metazoa	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45874	HOMEOBOX PROTEIN ABDOMINAL-B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan