Gene detail

Detailed information of evm.model.HiC_scaffold_2.79 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_2:1324568...1351058
NR annotation: XP_042524609.1, semaphorin-5B isoform X2 [Dipodomys spectabilis]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_2.79

ATGTACTGTGAGAGGGATTGTCAGAACTATATCCAACTGATCAAACCATACCAAGACAAACTATTCATATGTGGAACGAATTCAATGAGTCCTGTGTATAATATTACAAAGCTTGAAGACCCAAGTTCAGTTGTAATTGGAAATCAAGCCGCTAAAGACAAGTGTTCGCTAACACCAAGTCTACAACCAGTTGCAGCATTTTCAAGGCTGTCTGAATTAGTAACAAGTTCATTTGTGGATAAAAATGGCCGAGGCCCAGTAATCAGTGGATCTTATCTTGACAAGCGAAAATCATTGTGGGACCCAATCAAAACAAAGTCATATAGCCTAGAGACTCTCAGAAgTCCAGAGTTTAAAGAGAGTTTTGCAATCTATCCTAGTGTATATATTTTCTTCAATGAAGCTGCAGTGGAGCGATCCGAGGTAGTAACATACGGATTCTTTTCATGCACGAACACACTCCTAATACACGTGTTATGCACgtcatggcctTTTATGCAGCGCCGTTATCTTTTACTAGGCATTTTCAACAGTGCTTTACAACTATTCACCCCCTTAGCCAAGAccatttttatctttttccatttttttctaTACTCCCTTAGAAGTTTATATCGActcgcTTCAAGTTTCAAGGCATCTGCTATGTGTGTATTCTCTCTTCATGAATTAAAGAAAGCTTTTGAAGGCGATTTCTTGTACCGAAAGGATACGAACTCTCCCTGGTCACAAGTTGCGAATCCAAGACATTTTACTGAGTGCACTGTAAATCCTACCAGTCTGAATAAATACTCGATGAAAACGTACAATGAAACTGTACAGCCTGGAAAGCAGCCAACGAATTTCATGACAGGAAAAGCATTAACGGACTCGTATCGATACCGGTTGATGTATAACAGCCTCATAGCCGTACCAAGATTTTCATTTCACCGTAAATTGGAAAGATTCACCGCTGTTGCTGTTGATGTGGTCAAGAGTAGCACAAAGCAAAGCCATACATTGGTTTATGTTGCGACAGGGCAAGGAACGGTAATAGTACTTCATCTAAATCATGCTCGAAAGCTGACATGCGTACTGGATGAGATTCACTTATTTGAGGTAGCGTTATcaactgaaaatataaaaaacctGGAATTGTGGAAAGAGGAGCAAAAGTTGTTTGTTGGCACGAATGAAAGAGTCGTTCAACTCTCGCTGGATGTCTGTTCTCGCTACAAAAACGCAAGTTCGTGCGTTGAAGCTCGTGATCCTCGCTGTGGTTGGTTTAAAATCACAGAAAAGTGCATGTATATAGATAATAACAGAACAACCGACACAACGAATAATTTTCTGCAAGATCTTTCAAAGTGCCCAGTTAAAAAAGGCTATTGGTCTGCATGGTCAAGCTGGCATGTGTGCAAAGACAACAATAGCAACAGATATTGCCGATGCAGAAAAAGACGATGCCGCACATGCAATGAGAAAGATTGTATTGGCAATGGTATTCAGATCTATAATTGCTCGGCGACCAATATCGATGACAAGCAGTCATGGTTATCTAAAGGTGTAGTCGACGGTGGATGGTCGTTGTGGTCACATTGGTCCGTCTGCGATCACGACTCTTGTGGATCAGGTTTTCAAACAAGACAACGATCTTGCAATAACCCGATGCCAAATAACGGTGGACTACCTTGCACTGGAAATAGCCGTGAATGCAGAAAATGTAATGCAAAACCAAGTGCAGCTTCTTGCATACATAAAATTGTAAAGGGAATCTGGAGTAACTGCATCTGCTTTTTGGAGGAAGGAAAATCAGTTTCTGTTGGTGTTCAATTTCGTGTTAAAACATGCTACAGCAGTTGTGGCAATAAGAAAGGTTGCCCTACAGATCAAATACAAAATAGAACATGCTTTTGTAAGAATGAACCAAAAGCAAGCCGAACACCAGGCATTGTATTCACATCATTACCACACACGGCATCAAGTAGCAGCCGAACTGCCGCCCCAGGTTTTCGACTTACTGATATTATAATTGCTGTTGTTGGCACTTCGCTATTctgcttgattgtttgtttaGTAGCAATATTCTGCTTCGTTAAGCGGAAGAAGAGAAAAGGTATGTCTAACAGAAGAAGCTTAGACGACGATGATCTGACTAAGTTGCCTTTGAGGTCCATCGACTTGAAACAAGGGAACGGCTCCCTTGAGGACCAGAAACGGCCGCCGAGTAGTGACAGTGAAATATCGTTTGAAAATAATAAACACATGGTTCCGATAAATTTAGATacttctgttgttgttggtatggctttcaaaacaacaaataaatctCCTAGAAATggtaaattaaaaatgttcgGTGAAGACAAAGACTATGAAATGGGAATAACTTCCTTCTAG

Transcript

evm.model.HiC_scaffold_2.79

Protein

Uniprot

Uniprot term	Description
Q9VTT0	Semaphorin 5c OS=Drosophila melanogaster OX=7227 GN=Sema5c PE=1 SV=3
Q9W686	Semaphorin-3ab OS=Danio rerio OX=7955 GN=sema3ab PE=2 SV=1
Q62179	Semaphorin-4B OS=Mus musculus OX=10090 GN=Sema4b PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01437	PSI	Plexin repeat	Family	Interproscan
PF00090	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF01403	Sema	Sema domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001627	Domain	Sema domain	Interproscan
IPR027231	Family	Semaphorin	Interproscan
IPR002165	Repeat	Plexin repeat	Interproscan
IPR000884	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR016201	Domain	PSI domain	Interproscan
IPR036383	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR036352	Homologous_superfamily	Sema domain superfamily	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11036	SEMAPHORIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0001755	Biological Process	neural crest cell migration	Interproscan
GO:0007411	Biological Process	axon guidance	Interproscan
GO:0030215	Molecular Function	semaphorin receptor binding	Interproscan
GO:0030335	Biological Process	positive regulation of cell migration	Interproscan
GO:0045499	Molecular Function	chemorepellent activity	Interproscan
GO:0048843	Biological Process	negative regulation of axon extension involved in axon guidance	Interproscan
GO:0050919	Biological Process	negative chemotaxis	Interproscan
GO:0071526	Biological Process	semaphorin-plexin signaling pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06841	SEMA5; semaphorin 5	-	Axon guidance	ko04360	deepkoala