Detailed information of evm.model.HiC_scaffold_22.254 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_22:3300436...3326938
NR annotation: XP_047138892.1, high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X1 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
O70628High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A OS=Mus musculus OX=10090 GN=Pde9a PE=1 SV=1
Q8QZV1High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A OS=Rattus norvegicus OX=10116 GN=Pde9a PE=1 SV=1
O76083High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A OS=Homo sapiens OX=9606 GN=PDE9A PE=1 SV=1
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF00233PDEase_I3'5'-cyclic nucleotide phosphodiesteraseDomainInterproscan
PF16699CSTF1_dimerCleavage stimulation factor subunit 1, dimerisation domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001680RepeatWD40 repeatInterproscan
IPR023088Family3'5'-cyclic nucleotide phosphodiesteraseInterproscan
IPR023174Conserved_site3'5'-cyclic nucleotide phosphodiesterase, conserved siteInterproscan
IPR036971Homologous_superfamily3'5'-cyclic nucleotide phosphodiesterase, catalytic domain superfamilyInterproscan
IPR002073Domain3'5'-cyclic nucleotide phosphodiesterase, catalytic domainInterproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR003607DomainHD/PDEase domainInterproscan
IPR038184Homologous_superfamilyCSTF1, dimerization domain superfamilyInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR032028DomainCleavage stimulation factor subunit 1, dimerisation domainInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR044633FamilyCleavage stimulation factor subunit 1-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR44133CLEAVAGE STIMULATION FACTOR SUBUNIT 1Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0008081Molecular Functionphosphoric diester hydrolase activityInterproscan
GO:0004114Molecular Function3',5'-cyclic-nucleotide phosphodiesterase activityInterproscan
GO:0007165Biological Processsignal transductionInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005848Cellular ComponentmRNA cleavage stimulating factor complexInterproscan
GO:0031124Biological ProcessmRNA 3'-end processingInterproscan

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