Gene detail

Detailed information of evm.model.HiC_scaffold_24.20 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_24:117488...121681
NR annotation: MCP4483311.1, hypothetical protein [Flavobacteriaceae bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_24.20

ATGTCAGTGTCCTTAGAGGTTGTAAAAGAACTGCTGGAAGCACACCGTGCTTCGTTTCAAAGGATGATGGATGACCTGAAGTCCGAGGTGAAGGGCCTAAGAAAGGAGCTGGATGACGTGAAGGTGTCTATCCAGTTCGTCAGCAATCAAAATGATTCAATTATTACTAAGATCAAACTTTCAGAGGAAACTTCAAATAAACTCTCAAAGAAACTAGAAATTATCGAGGCAAACATGTATGATACTGTTGAGGACATGTTGGATAAGCAGGAATACTTAGAAAACCAATCGCGCAGGAATAACTTGAAGTTAATCGGTGTTCCTGAAGATTCGTCAGAGAACTCATGGGATGAAACAGAAAACACTGTGAAAGCTTTAATTAAATCTGAACTCGGTATAGATGAAGAAATCGCTATTGAAAGAGCACACAGGGTTGGTAAACCTAATCGAAAACCAAGAAAAGGCGGAAATAATGCCTCGACTATAAAAGAGGGCGAGGCCCCAAGGCACATTGTTGCCAAGTTCCAGTCAtggaaagtaaaagaaaaggtTATTCAGAAGGCCAGGGAAATTAAACCTGCTTCAGTGAAATTTGTTAATGACTTCTCTAGACGTACAATGGAAAAACGATCCAGCAGAATACAAGAGATGATTGATGCACGTAAGGCAGGCAAGTTGGCCTATTTTGTCAATGGCTGCAATCTTGTGATCAAAGAAAAGCAATCTGTTCCAACTCAGAACATCAAACATCAGAATAAACTTGCGAAACCTCCTGACATTGATATTGGTTTGACTGCTTCTGCCCTTGATGCTAGCTCAGTACTCACAATGACTTCACCTAGGTATCCATGTGGCATCTGCCACAAGAATGTTAACTCCAATCAAGCAGCAATATACTGCAATGAGTGCAATTCCTATGTGCATATCAAGTGTAATAACATATCCCCTTCTGAATATAAAGTTTACCAAGATAAGTCTGACAATGTTGCATGGTTCTGCATGAAATGCACTGAAGCTTTGTTTCCATTTGGTTCACTTGAATTTGAAGAGTTATCCCACCTTTATGATTTTGACTTACCCTCCTTTGTTGACTCTGCATTATCATTTGATGTCACTTCTAATCTTACAAACCTACCTAACTTAGATGACTATGATATTGATGAACAACTGCCTTCAAATGTCAATTCTAATTATCACTCTCCGGGTGATTTGGCTAATCTTTGCTCTTCTGATTCTGActtatctttatttcatatgAATATAAGAAGTCTCTCATGTCATTATGATGAGCTTGTTTCTACTTTAGTAAATCTCAAGGTAaattttgatgttgttgctgtttctgagCTTTGGCATACTTTTGATAATCCCATTAGCTTGAATGTTGAAATACCTGGATATAAACTTTTCCTTGCTCAATCACATAGCCAAAATGGTGGTGTTGGGCTTTACGTAAAATCTTGCTTAAATCCTATTCTCAGGACTGATCTTTCTAAGGACAGTATTGATTATGAGACTGTATGGGTAGAGATCGAGAACAAGAATGGTAAAAACTATCTGTTTTGTTGTGCCTATCGGCATACTAATTCTAATGTTGAAAACTTTACTAGCTATTTGCAAGAAATTCTTTCCATGCAGAATGTTTGTGACAAACAACTATTTATTCTGGGCGACTTCAATTGTGATCTCTTAAACACTCCTACTGCTAATTTTGTAAATCTGCTTTTTTCAAAGAGACTTCTTCCGTATGTTGTCCATCCATCAAGAGTATCTGGGGACTCTTCTAGTCTTATTGataacattttttcaaatacaTGTGAACAAGAAACTGTAAGTGGAAACATATTGATGCAAGTAACTGATCATTTTCCCCAATTTTTAATAGTTAGGCAGGGAGGTATTCTGTACAAGAATTTGTCATACTATCAACATGATTATTCTAAACTGGatgttgaaagtttgaaaaatgatcTTTCAAACTTAAATCTTAATTACCTCAATGATGATAATTTAGATGTAAATGCTAAATTTAACTTATTCCTATCAAATCTTGATAATTTAATTAATCATCATGCTCCCTTAAAGAAATTAAATAAGAAGGAAATAAAGTTGAGAAACAAACCATGGGTGagcaagaaaattcaaaaaatgatgCAAATCAGGGACAGATTATTTAAGAAATCAAAGCGGAATGATGATCAATCAGTTAAGGATTTGTATAAAAAGTTTAGAAATAAGGTTACAACTGCTTTGAAAGAGAGCAAAGCTACTTATTTTTACAATTATTTTCAGTCAAATAGTAACAACAATTATGGTCTGATTATAAAACATTCAATTGAGTGTGGTATTGTtcctgaaaaaatgaaaatagcaAAAGTTATTCCTATATTTAAAAAAGGCTATGTTGTTACAGCATCAAATTATAGACCCATATCCCTTTTGTCAGTTTTCAGCAAAATTACTGAAAAGGTGATGTATAAACGTCTATATGACTTTTTAGATCAATTCAATCTTCTATATCCTTTACAATTTGGTTTCCGGGCCAGGCATTCTATAGACCATGCTCTTATTAGTATGAcagagaaaataaaagaaagtttaGATAATAAAAAATATGGATGTGGAATTTTTCTTGATCTTCAAAAAGCATTTGACACTGTGAATCATAAAATTCTGTTGGATAAACTAGAACATTATGGCCTGAACTGGTTTAGATCTTACCTCACAGATAGGAAACAGTATGTCTCTGTTAATGGTTTTAAATCCAATTCACTTAATGTTACATGTGGTGTTCCCCAAGGTTCTGTCCTTGGTCCGCTGCTCtttttaattttcataaatGACCTAGCAAACTCTTCGCCTAATCTTTCTTTTTACCTTTTCGCTGATGACACTAATATTTATGTTGAAGCTGATAAAATTAGCGAGCTTGAAAAACTTGTAAATAAAGAACTGGGTAAAGTAAAACAATGGCTTGATGCTAACAGACTATCTTTAAATATTGAGAAAACGAATTTCATAATCTTTAGGTCTCACCAACATGCCTTAACAGAAAATATCAGTATAAAAATTGGAAGGCAAAATGTAAAACAATCAAAATATGTGAAATTTCTTGGTATTCTACTTGATGAACACCTTAGCTGGAAATATCATTTAAGTGAACTTGCTAAAAAGTTAGCAAGAACCTGTGGGATGTTTTTCAAGATAAGACATTACGTTCCTGTTAATATGTTGATTTGTCTTTACAACTCTTTATTTGCTTCTTTTCTCCAATATGGAATCGTTGTTTGGGGTTTTGCTTATGATTTACATCTTCAATCTGTCTTGTTATTACAGAAGAGAATAATCAGAGCTATTGCATTTCAAAGttatctttctccttcttctcctatCTTTAATGATTTAAAGATCCTGAAATTGCATGacttatttcaaattaaacttCTCTCTTTTGTCTATGAATGTGTTAATAAAATTTCTCCTGTCTGTTTCCATACTTATTTCCTATCAATCAAATCCATTCATCAACACAACACTCGTCAAGCATCTAAGAATGACATCTTTCTGACACAGAAAAACACCCTTCAATATGGTATTAGGTCAGTTCGCTTCACTGGTGCTGAATCTTGGAATAGCATTCCTTCAATCATCAAGGAATCTTCAACCTTATCCAGTTTTCGGTATAAACTGAAGTTGCATTATCTTGACATTGGCAGCAAATCTTAA

Transcript

evm.model.HiC_scaffold_24.20

Protein

Uniprot

Gene family

Uniprot term	Description
Q9NBX4	Probable RNA-directed DNA polymerase from transposon X-element OS=Drosophila melanogaster OX=7227 GN=X-elementORF2 PE=3 SV=1
Q95SX7	Probable RNA-directed DNA polymerase from transposon BS OS=Drosophila melanogaster OX=7227 GN=RTase PE=2 SV=1
Q03278	Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Nasonia vitripennis OX=7425 PE=4 SV=2

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|PHD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00628	PHD	PHD-finger	Domain	Interproscan
PF03372	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF02994	Transposase_22	L1 transposable element RBD-like domain	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001965	Domain	Zinc finger, PHD-type	Interproscan
IPR019787	Domain	Zinc finger, PHD-finger	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR019786	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR043636	Domain	L1 transposable element, RRM domain	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46670	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan