Gene detail

Detailed information of evm.model.HiC_scaffold_242.21 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_242:158439...163434
NR annotation: MCP4881255.1, DDE-type integrase/transposase/recombinase [Gammaproteobacteria bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_242.21

ATGGATGTCGTCAGAGCAAGGCTCACAGTTCAGGATACATCATCTAAAGAATTAatgaaatataaaggaatctcACACGCAGTGAGAACCATCGCAAAAGAAGAAGGATTTACTGCTTTGTACAAAGGGCTTACACCAACACTTATCTCCATTGCACCGTTTCTGGCCATTCAGCAATGTCTGTATGATGTTGTTAAAAACTGGGCAACTAATAGTATATTTGGAAACAACATCTCTACCTTCTTAGTCTGTGGTGCATTGGCTGGAACAGCTGCTCAAACGGCTGTTCATCCTCTCGATGTCGTGAGAAGAACTATGCAAGTTGACAAACAGGCCATGTCTGCGAAACAAAGAATCAACTCTTCATACATCCAACATTGCTCTCGTTTGTCAAGTGTTTTATCTCGGTTTCGCCAGCACAATTTGCAAGTCAAGGCTACTAAGTGCTCTTTTGGTGCTACAAATGTTGCATTTCTAGGTCATGTTGTCTCAGCACAGGGTGTGCATACAGATCCAAGGAAACTTGCTGCAGTCACTGACTTGCCTACCCCAACCACAGTTGCACAGACTGATGCCTCTGATGTTGGGTTGGGTGCAGTCCTTACTCAACATGATTCATCTGGCCTTGAGCATGTGATCTCATATGCAAGTAGATCTCTGTCTGACAGTGAAGCAAAATACTCTGCCACAGAGAAGGAAGCTCTGGCTGTGGTTTTCGCCACAAATCATTTCCGCCCTTACCTTCTAGGCAAGAAATTTACCGTGGTCACTGACCATCATGCTCTACGCTGGCTGCACTCCATCGAACCTAAGGGCCGTTTAGCCCGCTGGATCATGGACCTCCAGGAATATTCATTTGACGTCCAGCACAGGCCAGGGTCCACAAATCAAAATGCAGATTCTCTCTCACGTTTTCTGCCTGACCAATGTACAGCTTTTTCTCAGAGTTTCACCGAGATGCCATCTCAAACCTGTGCCAGCACAGTAACACCAAGTTTCAGTCTTCAAGAAGCTCAATTTTGTGCCAAAAACAAACTGGATCACTCCAAGAACAAGGCACCTCTTCAGCAAATTCAAGTCAGTGAGCCTTTTGTGTTTTGGGCCATGGATTACATGGGTCCCTTACCAGAAACTAGTCGTGGCAATAAGCACCTTCTTGTTGTTATGGATCACTTCACTAAGTGGTGTGAGGTTTTTCCCACTGTTGACCAGAAGGCTTCTACTGTTGCAGAAATTCTAGTTTCCAGAGTTTTCAGTCGTTTTGGGCCTCCCACTATTCTCCATTCCGACCAAGGTCGAAACTTTGAAAGCCACTTAATGCAGGAAATCTGTCTTTTAATGGGCACTCACAAGTCACGTACTACTGCTTACCACCCACAATGTGACGGACTTGTTGAGCGCCATAACAGAACCATTCAAGATATGCTTTCTGCTTTCGTGTCAGACCGTAAAGATGACTGGGATCTTTGGTCCATACGAGTTAGTTTTGGCCGTTCTGCCCGTACACCTCTTGAGCTCGATTTAGACTTGCCATTGAAAAGCCCTTGCAGTCAGTCAGAACACTCTCAATCCATTCGTCGCTCTTTACAGTCTATCAAACAGGCCGCTCAGCGCAATTTAGCGGCTAGTCGCTCTAGGCAGAAGCATTATTACGATCAGCGTGTCAGTAACTGGGGCCCTTATGCTGTTGGCAGTTCGGTGTGGTTGCGACGCCCAAAATCATGGAAATTCGGGGGCAGGTGGATAGGACCCTTCCAGGTTGTATCCAGACAAGGGGTAAACTATACCATACGTTCCAAGGAAGGGAAAACCCAGGTTGTCCACCATGACAACTTAAAAACTTGTGTTGTCCCAGCAGGTAAGGGAGTGCCATTCTCCCCTGTGCCAGAGTCTGCGGAAAATATCATTGTCGCTGGAGACCCTGCTGCACCAGCAGAGGACATTCCACCTGGGCAGGTTCCTGATGTACCCCGACGTGTGCGGCCTGCACGACTGAGGCAAAATATTGAACCCCCTTTGAGGTATGGAGAATTCGTGGTACATTAA

Transcript

evm.model.HiC_scaffold_242.21

Protein

Uniprot

Uniprot term	Description
P04323	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
Q9UR07	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1
P0CT41	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00153	Mito_carr	Mitochondrial carrier protein	Repeat	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR018108	Repeat	Mitochondrial substrate/solute carrier	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR023395	Homologous_superfamily	Mitochondrial carrier domain superfamily	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan