Detailed information of evm.model.HiC_scaffold_25.17 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_25:281490...359511
NR annotation: XP_047135870.1, splicing factor 3B subunit 1 isoform X1 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
O75533Splicing factor 3B subunit 1 OS=Homo sapiens OX=9606 GN=SF3B1 PE=1 SV=3
Q99NB9Splicing factor 3B subunit 1 OS=Mus musculus OX=10090 GN=Sf3b1 PE=1 SV=1
O57683Splicing factor 3B subunit 1 OS=Xenopus laevis OX=8355 GN=sf3b1 PE=2 SV=1
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08920SF3b1Splicing factor 3B subunit 1DomainInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF10513EPL1Enhancer of polycomb-likeFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR015016DomainSplicing factor 3B subunit 1Interproscan
IPR001680RepeatWD40 repeatInterproscan
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan
IPR019542DomainEnhancer of polycomb-like, N-terminalInterproscan
IPR038737FamilySplicing factor 3B subunit 1-likeInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12097SPLICING FACTOR 3B, SUBUNIT 1-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0000245Biological Processspliceosomal complex assemblyInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0005686Cellular ComponentU2 snRNPInterproscan
GO:0005689Cellular ComponentU12-type spliceosomal complexInterproscan
GO:0071004Cellular ComponentU2-type prespliceosomeInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan

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