Detailed information of evm.model.HiC_scaffold_25.206 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_25:3012588...3028934
NR annotation: EDO34165.1, predicted protein, partial [Nematostella vectensis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q28084Collagen alpha-3(IV) chain (Fragment) OS=Bos taurus OX=9913 GN=COL4A3 PE=1 SV=1
Q28247Collagen alpha-5(IV) chain OS=Canis lupus familiaris OX=9615 GN=COL4A5 PE=2 SV=2
P29400Collagen alpha-5(IV) chain OS=Homo sapiens OX=9606 GN=COL4A5 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF01413C4C-terminal tandem repeated domain in type 4 procollagenDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR008160RepeatCollagen triple helix repeatInterproscan
IPR001442DomainCollagen IV, non-collagenousInterproscan
IPR016187Homologous_superfamilyC-type lectin foldInterproscan
IPR050149FamilyCollagen superfamilyInterproscan
IPR036954Homologous_superfamilyCollagen IV, non-collagenous domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24023COLLAGEN ALPHAInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005201Molecular Functionextracellular matrix structural constituentInterproscan
GO:0005581Cellular Componentcollagen trimerInterproscan
GO:0005604Cellular Componentbasement membraneInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0030020Molecular Functionextracellular matrix structural constituent conferring tensile strengthInterproscan
GO:0030198Biological Processextracellular matrix organizationInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan

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