Gene detail

Detailed information of evm.model.HiC_scaffold_26.580 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_26:6291412...6297143
NR annotation: XP_046839045.1, uncharacterized protein LOC124433328 [Xenia sp. Carnegie-2017]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q60847	Collagen alpha-1(XII) chain OS=Mus musculus OX=10090 GN=Col12a1 PE=2 SV=3
Q99715	Collagen alpha-1(XII) chain OS=Homo sapiens OX=9606 GN=COL12A1 PE=1 SV=2
P13944	Collagen alpha-1(XII) chain OS=Gallus gallus OX=9031 GN=COL12A1 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00264	Tyrosinase	Common central domain of tyrosinase	Domain	Interproscan
PF00092	VWA	von Willebrand factor type A domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036465	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR002227	Domain	Tyrosinase copper-binding domain	Interproscan
IPR008922	Homologous_superfamily	Di-copper centre-containing domain superfamily	Interproscan
IPR002035	Domain	von Willebrand factor, type A	Interproscan
IPR050316	Family	Tyrosinase and Hemocyanin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11474	TYROSINASE FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00736	MGAT2; alpha-1,6-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase	EC:2.4.1.143	Glycosyltransferases	ko01003	deepkoala