Gene detail

Detailed information of evm.model.HiC_scaffold_26.607 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_26:6638102...6653439
NR annotation: XP_047146481.1, guanine nucleotide-binding protein-like 3 homolog isoform X2 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_26.607

ATGGTTATGCCAAagaagaaaagtaaaagaCTTACTTGTGCAAAGAAGTATAAAATACAGAAGAAAATTCGAGAGCATCAcagaaaagccagaaaagaagcaaagaaaaatgaaaaatcaaAGTCGCGTAAAGATCCTGGAATCCCAAATTCATTTCCATTCAAAGAGAATGTCTTGAAGCAACTCGAAGAAAGGAAGCAAAGGGctttagaagaaaaagaaagacaaaaaaatcaAAGACAGAAAGAAGTTAATAAGAAAAGGAAGCTTGAACTTCTTCAGAAAGATGCAcagaaaagagcaaaagaatTTGAGAAAAAGCAAGAGCAGCTCGGTCAGCAGGCAGAAAAAGTTCTCTCGAAAAGTGCAGaaaattcattgaaaacatATTACAAAGAGTTTAAGAAGgtCGTAGATGCTGCAGATGTTGTTATTGAAGTTCTTGATGCCAGAGATCCAATCGGCTGTAGATGTCCACAGATGGAGGAAATTATAATGAATTCTGGTGGTAATAAAAGACTGGTTCTTTTGCTCAACAAAATCGATCTTGTTCCGAAAGATATTGTTGAAAAATGGCTGAAATATTTTCGAAATGAACTGCCAACACTTGCTTTTAAAGCCTCAACTCAATCTCAGAAACAAAAACTGggTCAGAGTAAAGTTCCAGTTGTGGCTGCATCTCAAGAAATGTTATCTTCAACTGGCTGCGTAGGAGCAAAAACCCTGCTGAAGTTATTAGGAAATTACTGCAGAAGTAAAGACATTAAAACGTCCATCACTGTTGGAATCGTTGGTTTTCCCAATGTCGGAAAAAGCAGTGTTATAAACAGTTTGAAAAGAAGCAAAGCATGTGGAGTTGGATCGACTCCTGGATTCACGAAAAATATGCAAGAAGTGATGTTGGATAAGCATGTTAAATTATTAGACAGTCCAGGTATTGTAATTGGAACAGGTTCAACAGACACGCAGATTATTTTGAGGAACTGCGTCAAGATTGATCAGTTACAAGATGTCGTTATGCCTGTTGAAGCTATCCTACGACGATGCAACAAAAATCAGataatGGAAAAGTACTGCGTTCCTGATTATCATGATGCTCAAGAGTTCTTGGGGCTTCTTGGCAAAAGACTTGGAAAGTTGAAGAAAGGTGGTGTTCCAGATACATATGCTGCTGCTAAATCAATATTACAAGACTGGAACAGTGGCAAGATTACCTTCCATACTGTTCCTCCTGAACGAAAAATCGACGAGTCTCATGAATCATCATCAGTTGTTCAATATTGGGGAGCTGAATTTGATTTGAAAGCAATCGAAAAAGAAGAACAGGAAGACATGAAAGATCTAATAAGTGCCATGAGTGGTTCACTCGTTTTGAATCCTGGAAAACCAGCTGAAATGGATGCAGATGTTGCAGCTGAAGAAGATAAACAAAGCGTGgATTCTGAATCTTCAGAAGATGAAGAcattgaagatgaagaagaggaatTTGAGGAAGATATGGAAGTTGCTACAAATCAGAATGTTGTGATAAAAATGgagaaaaagcaaaaaggaaagaaatcaGTTCAAAAAGATGAAGAAATGGTAGAAGTTAATGACGAGAATATGCAAGTAAATCGAGCTAATAAAAAAGCATACAAACgaagaaaaaaaatcaaagaaaacaagGGATATAACAAGCTGCCATATTGCAACACTCATTACCCGACCACGAAGTTTACTGCTGTTGCTGATACTCCCGAGAATAAAAGATTGGCCAAGAATACAGCCCAACAAAGCAATGTTGTCTATCATGAGAAGTTCGAGAGTGAAAGAGGCAAATACACAGCCGTTGAAGATGACCCAGAAACGATGAGATTAAAAAAGAATACGAAACAAATTAGTGATCTTGCCTACAAAGGCCACGCTCCACCACCACATCAACTACCACCATCAGAAGCTCCAGCACCAAGCCGAGTTGTTGATTCTGTTCCCCGTGCTGCCCCAGTCGCTGCTGCCCCTGAGCCTGTAGCACCACCCCAAGAGGCACCACAAGCTGCCCCGGCATCTTCAGGACCGAGGTATCGTGCCATGTATGATTATGcagctgctgatgatgatgaagtttcaTTCTCTGAAGGAGACATTATTGTGAATGCTGAAGTTATTGATGAAGGTTGGATGACTGGAACTGTCGAAAGCTCAGGTCGACAGGGAATGCTGCCTGCAAATTATGTTGAAAAGATTTAG

Transcript

evm.model.HiC_scaffold_26.607

Protein

Uniprot

Uniprot term	Description
Q21086	Guanine nucleotide-binding protein-like 3 homolog OS=Caenorhabditis elegans OX=6239 GN=nst-1 PE=3 SV=1
Q9M8Z5	Guanine nucleotide-binding protein-like NSN1 OS=Arabidopsis thaliana OX=3702 GN=NSN1 PE=1 SV=1
Q3T0J9	Guanine nucleotide-binding protein-like 3-like protein OS=Bos taurus OX=9913 GN=GNL3L PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01926	MMR_HSR1	50S ribosome-binding GTPase	Family	Interproscan
PF14604	SH3_9	Variant SH3 domain	Domain	Interproscan
PF00880	Nebulin	Nebulin repeat	Repeat	Interproscan
PF08701	GN3L_Grn1	GNL3L/Grn1 putative GTPase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000900	Repeat	Nebulin repeat	Interproscan
IPR006073	Domain	GTP binding domain	Interproscan
IPR001452	Domain	SH3 domain	Interproscan
IPR050755	Family	TRAFAC YlqF/YawG GTPases, Ribosome Maturation	Interproscan
IPR030378	Domain	Circularly permuted (CP)-type guanine nucleotide-binding (G) domain	Interproscan
IPR023179	Homologous_superfamily	GTP-binding protein, orthogonal bundle domain superfamily	Interproscan
IPR036028	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR014813	Domain	Guanine nucleotide-binding protein-like 3, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11089	GTP-BINDING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14538	NUG1, GNL3; nuclear GTP-binding protein	-	Ribosome biogenesis	ko03009	deepkoala