Gene detail

Detailed information of evm.model.HiC_scaffold_26.690 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_26:7308386...7318490
NR annotation: XP_028398595.1, 72 kDa type IV collagenase-like [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_26.690

ATGGCATTGATGATAAGTTTCGTGGTGCTTTTTATTGGTCATGGTGCGTTTATTGCATTCGCAGCGCCATTGCCTAACTTAGCAGTCGATTTAACAGGGTTAGTAGACAACAAGCTGAAAGATAAAGTGCATAAAATCGAAATTGGCCATAAAGATGAAGATGGAAAAGGGCCAGTTATAAATGTTCATATACATATAAACGGAAAAGGAAGAAAACGTAAAAATGGCAAGGACAAAGAGCAAGGATATACCAGTACAGTTGGACCGAAGTTGAATGAAAAAGCAAAGGAACGGACAGCCGCAGCGGTTAGAGAATACATGAAATTTTTATCTGTGAATGATGATACTGATTGTGATTATGAGGATGATCACGATGGTCGTGACTGTGAtcatggttatgatgatgatgatgatgctgatgatgatgctgttcATAGCAAGAATGATGATGGAAGCGGAagcaatgatgatggtgatgatatgatgatgatgatcaatgatgataatcatggcaatggggatgatgataatgataatgataatgatgacgataacgatAATGGTAGTGAAGTTCATGatagcaatgatgatgatgattacaatggTGATTATAacgatgctgaagatgatgattacgattctaatgctgatgatgaggatgatagaaacaatgatgttgatgatgatgacgatgatgGAATACTGGATGAAAGTACCAAAAAACAATTCACGGTTCCAAGATGCGGATTACAAGATCCGataaaaaagaaaggaagatCAAGAAAGAGACGATATCTTCTTCAAGGAGGCAAATGGGATTTGAGCAAGCATGCTGGGAGAACACTAACATGGTTTCTAGAGAACACAGCAAGAAACCTCGAGAAGGAAGATGTCAGAAAGGAACTTACCAAAGCATTCGGAATATGGCAAAAACATGCTAACATCTATTTCAAGGAAGTAAATGCCAAAACAATTAATGATAAAGAGGCAGATATTCTAGTAAAGTTTGCCAATGGTTGTCATCAGGATCCGTATTGCTTTGATTTCAGAGGTGGAACACTTGCTCATGCTTTCTATCCTTATCCAGGACAAGCTATATCTGGAGATGTTCATTTTGACAATGACGAGTACTATGTCATCCAGAAATCGACTGGAACTGATCTTTTATGGGTGGCAGTTCATGAAATCGGACACAGCCTCGGTTTGGAGCATTCGAATATCAAAGGTGCCATCATGTTTCCATGGTATCAAGGTTACAAGGCAGACTTCGACTTGACAGCTGACGACACAGCCGGAATTCAAGCACTTTATGTGCAGCCAAAACCAACAACCATACCAGCAAAGAGAACAACAAAACCATTCTATCTACGATTCAGCTGTCCCAAATACATGGATGCCTCCTATGTCAGTATTCGTTATAAATGGATGATAGTTATCTCTGGTCTCTGGATGTATCTAGCAAATAGAAATGGATTCAGACATGGGCCATTAGTAAAGAAGAATTACTTTCCAAGAATAAAAGGAACTATTGATTCTACAATGGTGAATTCAGCGACCGGAGAAACACTGATATTCTCAGGAAAACACTTTTACATCTATCGAGAGTTCATGCACATAGCAGGACCATTACCGCTGACAGATCTCGGTTTTAgcaaagacattgaaaagatcGACGCATCTTTGAAGTGGAAAAGAAATGGTGTTTATTATATATTCGCAAACGAACTTTTCTGGCGTTTCAATCCAACAAAGCCTGGAATTGTGAAAGAAGGATATCCAAAAAAGATCAGAGATTGGTGGAAAGGCATTCCTGATTATCTATCGACCGCTGTGACCGATTTTGATAATATTACCAGATTTACCAAGGGAGAACAATATTATACACTCATTGACAGTGCTGTCAGAACTGAGCATGATTACCCAGAACGAATTGGAGTGAATTGGATGCAGTGTGGTGTAACGAGTCCAGTGCCAACAGATAAAGTAAGAGAATACACAGGACCTTTAGTTGCAGAACCTTAA

Transcript

evm.model.HiC_scaffold_26.690

Protein

Uniprot

Uniprot term	Description
Q9R0S2	Matrix metalloproteinase-24 OS=Mus musculus OX=10090 GN=Mmp24 PE=1 SV=2
Q99PW6	Matrix metalloproteinase-24 OS=Rattus norvegicus OX=10116 GN=Mmp24 PE=1 SV=1
Q10739	Matrix metalloproteinase-14 OS=Rattus norvegicus OX=10116 GN=Mmp14 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00413	Peptidase_M10	Matrixin	Domain	Interproscan
PF00045	Hemopexin	Hemopexin	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006026	Domain	Peptidase, metallopeptidase	Interproscan
IPR036375	Homologous_superfamily	Hemopexin-like domain superfamily	Interproscan
IPR033739	Domain	Peptidase M10A, catalytic domain	Interproscan
IPR018487	Repeat	Hemopexin-like repeats	Interproscan
IPR001818	Domain	Peptidase M10, metallopeptidase	Interproscan
IPR021190	Family	Peptidase M10A	Interproscan
IPR024079	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR018486	Conserved_site	Hemopexin, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10201	MATRIX METALLOPROTEINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008237	Molecular Function	metallopeptidase activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0004222	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0030198	Biological Process	extracellular matrix organization	Interproscan
GO:0030574	Biological Process	collagen catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07998	MMP19, MMP18; matrix metalloproteinase-19 (RASI)	EC:3.4.24.-	Peptidases and inhibitors	ko01002	deepkoala