Gene detail

Detailed information of evm.model.HiC_scaffold_267.54 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_267:624656...658107
NR annotation: BBE28384.1, GTP-binding protein [Aurelia sp. KA-2018]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_267.54

AtggtgatcataatgatgatgatgatgatgataatgttggtgaataattttgataataatgatgTATATTATGACGATGACaacaacgatgatgatcatgatgatgatgatgttgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgataaggataatgatgattatgatgatgctaatgattataatgataatgatgatgaatctGACTACTGTATACATTATAAAATCTCAAGAATCAGACAGTTTTAcctgaaaaagataaagttcACTCAACAAAACTACCATGACAAACTGACTCAGATTGTTACAGATTTTCCAAGATTAGAGGACATTCATCCATTCTATGCAGATTTGCTGAATATTCTTTATGACAAAGATCACTACAAGCTTGCTCTTGGACAGATCAACACAGCAAGACATCTGATAGACAATGTGTCGAAAGATTACACAAGATTGATGAAGTATGGAGATACCATGTACAGGTGTAAGCAGCTTAAAAAGGCTGCTCTTGGCAGGATGTGCACTATAATGAAAAGGCAAAATCAGAGTTTGCAATACTTAGAGCAAGTAAGACAGCATTTATCAAGACTTCCCTCAATTGATCCAAATACTAGAACGCTGCTGTTATGTGGATTTCCAAACGTTGGCAAATCAAGCTTTATGAACAAAGTGACAAGAGCAGATGTTGAAGTGCAGCCATACGCTTTTACTACAAAGTCACTTTATGTAGGACATATGGATTATAAGTACCTAAGATGGCAGGTAATTGATACTCCCGGAATCTTGGATCATTCTTTAGAAGAAAGAAACACCATCGAAATGCAGGCTATCACTGCCTTGGCACATATTCGCGCCGCTGTGTTATACGTCATGGATCTGTCAGAACAATGCAATCATTCAATTGAAGAACAAATAGAATTGTTCAATAACATTAGGCCATTGTTTACAAATAAACCAATCGTCGTCTGCCTGAACAAAATTGACATTTTAACAGTGGATGAACTtccagaagaaaaaagaaaattactagatgttttcaatgaagatgGCATTACTGTAATACCTATGAGTACCATGACTGAAGAAGGAGTGATAGCCGTGAAAACAGACGCTTGTGAAAGACTTCTTGCCCATCGTGTCGAAgtcaaaatgaagagcaaaaagATGGGAGATATAATCAACAGACTGCATGTCTCGATGCCAGAACCAAGAGACGCCAAAGAGAGGCCAGCTTTCATTCCAGAAGGTGCCGTAAAGAAAGGGAAAGGTATGGACGTGGACAAGCCTCACAAAAAGCTACAGAAAGATTACCAAAGAGAACTTGGTGAAGATTACAATtttgatcatcaaaaactgtaTGTTGTGCCAGACGGAGAGAAATATGACGTCATTCCTGAGATGCTTAATGGCAAGAATATTGCTGATTTTATCGACCCTGAAATTTTGGAGAAATTAGAAGCTTTAGAAAGAGAGGAGGAGTTAAGAGAAGCAGCCGGTGTCTATGATGAAGAGATTGATGATATGGATTCAGAAGAAGAGGAGACGCAAAAACTCGCTGCAGAAATtcgaaaaaagaagaaaattcgaGTTCAAGAGCATCGTGCAAAGAAGGGATCGAATTACCCTACACTACCAAGAAAGGCGTCATTAAAGcTTGACAAATTTGGAAAGCCACAGAAGAAAGGAGCCGAGCAAATGGATTTCAATATCGATGGTGATCTAGAAATGATGgaTACTGATTCCACACGTGCGAGATCCGTTTCTCGAAAGAACAGAAAGAGAAAACACGATGAAAGTGTTGCTGCTAGTACTTCTCGGGCGAGAAGTTCTTCTAAGAAAGTACCCCGTGATCAATCTGGAATACCTGATCCACAGAAGCGAGCCAAAGTCAGAAAATTGGCCAAAGTGTCACAAAGAAAAATTAATCAATTTGGACGAGCTGatgatgatgatggtgattatgatgatggtgatgatggtgattatgatgatgatgatggtgatgatgatgaggaggatgatgacgtgatggtgattatgattattatgatgatgAGGGTTTTTAGTcgcttttactgcaatttatttcaattgatTAAGCAACTGTTAGCTAGGCCCagagttccAAAGTCTGACCGCACATGTACCGATTTGGCTTGGAATCCAGTTGAGCACAACCTCCTGGCAGTTGCCCTGGATAAAGTACGTAATGATCATTCACTTCTTGTTTGGGACGTTGAATCGAAAAAAGCTTCTGCAAACTCAAAAAATGTCTATGGAAGGCATCAACGACTTGACGGATCTTCGGTGATAAGCCCGTCTTTGAAGAATGGTCTTTCAGAATCGACTGTGTCTCTCGCCTGGTTTCCATCGCAGCCAAGAACTCTTGTGGCAGGCCAAGGACAGAAATTTCTTAGAATCTATGATCTCAGAGATCAAAGTAAATTGATTGGTTTTGGTGTTACGAATAACAAAGCAATGAATGGAGTTTGTGTGGATCCATTTGATGAACATAGATTTGCCTCATTTGCAGAGGCAACTCAAGGTCCTGTTTTGGCCAGTCAGACGAAACCCATAACAAGTATATCTTGGTCACCGACTAGGAAACATTCAATTGCCGTTCTCCTCAAGAACAGTCCAGTCATAAAACTTTTTGATTTACAACATTTGTCCACGGAGCAATCAATGTCGTTTCCTGCTGGAATAGAGGAAGAAATGGAGGCAATTATCATGGAAAGAAACATCCAACGAAATCTAAATTATGTACAGATTTTTGAGCGTATTGCTTTGAGTTGGTCTTCAAGTGGTGGTATCGTCTGGGGATGTGGAAAGCATATGCTAGCATGCTCCGAAACTGTAAGTCTCAAATTATGTGTaacattttttgccattttttctGGGTATTCGCTGGTTGAAACTTCTTATTTAAAGGGACGAAGATTTTACGGTGTAAAATCGATAATAAAGGGCGAAATGAACATGGCTGCTCTTAAACTGAGAATGAAAGCACGAAGTAGAACACAGTCTGGAGGAAAATGCGAGAAAGGTCAGCTGGATGAGTCCAATAGAATCGGTAGTCCAATTGTTGCTAGTCCGCTTGTCAGTGAAGACAGAAAATTGGCTCTGCAGCTTTGTCGATGGGATTTTGTTGGTAATTCACTGAACGAACATTTGATCAAGCTGGAACAGAATGGTGAATATGAACGTGCCGCTGCAACTGCCCTCTTCAACAATCAAATGCGGCTAGCAATCAATATTCTTAGTGGAAGAAACATTCGAGAAGTCAAGTCTGATAACGGCCCACGTAGTGATAGAACGATACCAGGTATTGTACAACTTTTGCATCCCTTTGTCTAA

Transcript

evm.model.HiC_scaffold_267.54

Protein

Uniprot

Uniprot term	Description
Q99ME9	GTP-binding protein 4 OS=Mus musculus OX=10090 GN=Gtpbp4 PE=1 SV=3
Q9BZE4	GTP-binding protein 4 OS=Homo sapiens OX=9606 GN=GTPBP4 PE=1 SV=3
Q99P77	GTP-binding protein 4 OS=Rattus norvegicus OX=10116 GN=Gtpbp4 PE=2 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21720	MIOS_WD40	MIOS, WD40 repeat	Repeat	Interproscan
PF17835	NOG1_N	NOG1 N-terminal helical domain	Domain	Interproscan
PF21719	MIOS_a-sol	MIOS, alpha-solenoid	Repeat	Interproscan
PF06858	NOG1	Nucleolar GTP-binding protein 1 (NOG1)	Family	Interproscan
PF08155	NOGCT	NOGCT (NUC087) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR041623	Domain	NOG1, N-terminal helical domain	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR049092	Domain	MIOS-like, alpha-solenoid domain	Interproscan
IPR010674	Domain	Nucleolar GTP-binding protein 1, Rossman-fold domain	Interproscan
IPR006073	Domain	GTP binding domain	Interproscan
IPR012973	Domain	NOG, C-terminal	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR031167	Domain	OBG-type guanine nucleotide-binding (G) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45759	NUCLEOLAR GTP-BINDING PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0042273	Biological Process	ribosomal large subunit biogenesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06943	NOG1; nucleolar GTP-binding protein	-	Ribosome biogenesis	ko03009	deepkoala