Detailed information of evm.model.HiC_scaffold_27.58 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_27:764606...799051
NR annotation: XP_047132382.1, neogenin [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9W734Mothers against decapentaplegic homolog 6 OS=Gallus gallus OX=9031 GN=SMAD6 PE=2 SV=1
O35182Mothers against decapentaplegic homolog 6 OS=Mus musculus OX=10090 GN=Smad6 PE=1 SV=1
O43541Mothers against decapentaplegic homolog 6 OS=Homo sapiens OX=9606 GN=SMAD6 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00041fn3Fibronectin type III domainDomainInterproscan
PF00035dsrmDouble-stranded RNA binding motifDomainInterproscan
PF03165MH1MH1 domainDomainInterproscan
PF03166MH2MH2 domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR013790FamilyDwarfinInterproscan
IPR003961DomainFibronectin type IIIInterproscan
IPR001132DomainSMAD domain, Dwarfin-typeInterproscan
IPR003619DomainMAD homology 1, Dwarfin-typeInterproscan
IPR036116Homologous_superfamilyFibronectin type III superfamilyInterproscan
IPR036578Homologous_superfamilySMAD MH1 domain superfamilyInterproscan
IPR014720DomainDouble-stranded RNA-binding domainInterproscan
IPR008984Homologous_superfamilySMAD/FHA domain superfamilyInterproscan
IPR017855Homologous_superfamilySMAD-like domain superfamilyInterproscan
IPR013019DomainMAD homology, MH1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13703SMADInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0007179Biological Processtransforming growth factor beta receptor signaling pathwayInterproscan
GO:0009653Biological Processanatomical structure morphogenesisInterproscan
GO:0030154Biological Processcell differentiationInterproscan
GO:0060395Biological ProcessSMAD protein signal transductionInterproscan
GO:0070411Molecular FunctionI-SMAD bindingInterproscan
GO:0071144Cellular Componentheteromeric SMAD protein complexInterproscan
GO:0140416Molecular Functiontranscription regulator inhibitor activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005667Cellular Componenttranscription regulator complexInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K05694PTPRB, PTPB; receptor-type tyrosine-protein phosphatase betaEC:3.1.3.48
Protein phosphatases and associated proteinsko01009deepkoala

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