Detailed information of evm.model.HiC_scaffold_270.5 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_270:64931...69548
NR annotation: CAB4002070.1, E3 ubiquitin- ligase RNF146 [Paramuricea clavata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q66JE4E3 ubiquitin-protein ligase rnf146 OS=Xenopus tropicalis OX=8364 GN=rnf146 PE=2 SV=1
Q6GQD5E3 ubiquitin-protein ligase rnf146 OS=Xenopus laevis OX=8355 GN=rnf146 PE=2 SV=1
Q7ZUK0E3 ubiquitin-protein ligase rnf146 OS=Danio rerio OX=7955 GN=rnf146 PE=2 SV=1
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|RING

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13920zf-C3HC4_3Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF02825WWEWWE domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR037197Homologous_superfamilyWWE domain superfamilyInterproscan
IPR004170DomainWWE domainInterproscan
IPR018123DomainWWE domain, subgroupInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR044110DomainRNF146, RING finger, HC subclassInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR033509FamilyE3 ubiquitin-protein ligase RNF146Interproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13417UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0016055Biological ProcessWnt signaling pathwayInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:0072572Molecular Functionpoly-ADP-D-ribose bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K15700RNF146; E3 ubiquitin-protein ligase RNF146EC:2.3.2.27
Ubiquitin systemko04121deepkoala

TOP