Detailed information of evm.model.HiC_scaffold_28.100 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_28:1270205...1284739
NR annotation: CAJ81781.1, Novel protein similar to poly(A)-specific ribonuclease (deadenylation nuclease), partial [Xenopus tropicalis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q90ZA1Poly(A)-specific ribonuclease PARN OS=Xenopus laevis OX=8355 GN=parn PE=1 SV=1
Q8VDG3Poly(A)-specific ribonuclease PARN OS=Mus musculus OX=10090 GN=Parn PE=1 SV=1
O95453Poly(A)-specific ribonuclease PARN OS=Homo sapiens OX=9606 GN=PARN PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08675RNA_bindRNA binding domainDomainInterproscan
PF04857CAF1CAF1 family ribonucleaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR014789DomainPoly(A)-specific ribonuclease, RNA-bindingInterproscan
IPR051181FamilyCAF1 family poly(A)-specific ribonucleasesInterproscan
IPR006941FamilyRibonuclease CAF1Interproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15092POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0004535Molecular Functionpoly(A)-specific ribonuclease activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006402Biological ProcessmRNA catabolic processInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0000175Molecular Function3'-5'-RNA exonuclease activityInterproscan
GO:0000289Biological Processnuclear-transcribed mRNA poly(A) tail shorteningInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan

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