Detailed information of evm.model.HiC_scaffold_28.21 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_28:198223...216957
NR annotation: XP_002155293.2, caskin-1 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q6DD51Caskin-2 OS=Xenopus laevis OX=8355 GN=caskin2 PE=2 SV=1
Q8VHK1Caskin-2 OS=Mus musculus OX=10090 GN=Caskin2 PE=1 SV=3
Q8WXE0Caskin-2 OS=Homo sapiens OX=9606 GN=CASKIN2 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13857Ank_5Ankyrin repeats (many copies)RepeatInterproscan
PF00536SAM_1SAM domain (Sterile alpha motif)DomainInterproscan
PF12796Ank_2Ankyrin repeats (3 copies)RepeatInterproscan
PF07653SH3_2Variant SH3 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002110RepeatAnkyrin repeatInterproscan
IPR013761Homologous_superfamilySterile alpha motif/pointed domain superfamilyInterproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR001660DomainSterile alpha motif domainInterproscan
IPR036028Homologous_superfamilySH3-like domain superfamilyInterproscan
IPR001452DomainSH3 domainInterproscan
IPR033635FamilyAnkyrin repeat and SAM domain-containing protein 1/CaskinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24174ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan

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