Gene detail

Detailed information of evm.model.HiC_scaffold_285.105 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_285:680167...682938
NR annotation: CAH3032773.1, unnamed protein product [Porites lobata]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
P57756	Ficolin-2 OS=Rattus norvegicus OX=10116 GN=Fcn2 PE=2 SV=1
Q29042	Ficolin-1 OS=Sus scrofa OX=9823 GN=FCN1 PE=1 SV=1
O70497	Ficolin-2 OS=Mus musculus OX=10090 GN=Fcn2 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01391	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF00147	Fibrinogen_C	Fibrinogen beta and gamma chains, C-terminal globular domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR008160	Repeat	Collagen triple helix repeat	Interproscan
IPR002181	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR036056	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR050373	Family	Fibrinogen C-terminal domain-containing protein	Interproscan
IPR020837	Conserved_site	Fibrinogen, conserved site	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR014716	Homologous_superfamily	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19143	FIBRINOGEN/TENASCIN/ANGIOPOEITIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0062023	Cellular Component	collagen-containing extracellular matrix	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10104	FCN; ficolin	-	Lectins	ko04091	deepkoala