Gene detail

Detailed information of evm.model.HiC_scaffold_29.1101 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_29:7557941...7573305
NR annotation: CAH3151931.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_29.1101

ATGGCAAGTGTTGACCTGCAACATCTTTTTACtcaaatttcagaaacattgtCTCTAGAGGATAAAGAAGCAACTGTTGAGAGCTGTAAATCAGTTTTTGGGAGAAAATATGAGGGGGACCTTATTGGCGTATTGAATAAGCTTGAAAAAGACAATCGTATAAGCATTTCTAATACTTATATCATCGAAGAATGCTTGGCAACGAGCTCTGCTGTGACTAAATCACAGGTGTCAAAACTCATCCAGCAATTTCAAAAATCCTTcaagaaacagattgaaaatttaaaacaacaagaaaatattcttatcaaaagaaaagcactCCATGACATGGCAGAAACTGTTATTCGGAATGGACATGGACTGCTTTTGCACGGGGACCATGGGACGGGAAAGACATGGCTTGCAAAAGATTTTATCAATGAAAGATATGGTGGAAAAGCAAAAGAAGTTGATTTAAGAGATATCAAGGATATCAGAGTTGCAACTGTCGAGATTTTAAGACAGTTTGGATATCCTGTCAGTGTGAAAGATATtaatttaaaaatcttttcctcACACTTgagaaaaatcaaacaaagtaCCATGCTATTTTTAGATAACGCAGATGCATTTTTTGATGGTGAAGAAAGTGAGCAAACTGACAATTATAATTTTTCTGACATTATGGAGAATATCGTTGATGCAGGGCGaggcaaaattaaaattttaataaCATCCAGAAATCAAAGTCAAAGCGAGAAGGTGAACAGACTTATAAAACAAGAAAGAATTGGTCATCTTGAAGGACATTTAGCCATGAAATTGTTACGGAATTTCAAAATGCATTCAATGCCAACCGAAGAGCAGTTAGTAACAGCGGTTGAACTCTGTAAGAGTTTACCACTTAATCTCACAATTCTAGGAGGCGTTCTTCAAGACCACGGATCTTCCTTGAATGACGTTCTTCAGTTTGTCCAAAAAGATGTCGACACTGCCACAGCTCTCCTTTCTAAACTTGagttaaataaagaaaaagagacaAGCATACACACTGAAAGTTTTTTCAATTTGAGCTTCAATAAGCTTAGTGATACATTACAGCAATATGCTGTGTGCATGTCTCTTTTCTGCAGAGCTTTCTCTATATCAAGTTTATCATCAGTACTGGATAATGAAAATATCCAGAAACTCAAAATGTGTCTGAATGCATTAAAGCATGTGAAAATTATTCATGAAGTGAAGGAGACAGCAAAATTAAGTGACATTTGGTTTGATATGCATCCCAAAATTAGACAATATTTAAAGTCTAGAAAAACTGATGAGCACATTGCTTCATTCTATGAAGAAGCCAAGTCgaaatttttaagaaagtaCAAATTATATTTCCAACAACTTGCGACTTTGCTGGAAAAAAACTACCAAGAAGCCCAGTTTCTCTTGCAAGAAGACTActcaaattttgaatttgtttttgctgaGCATATAAATACTGGAATGCCGCTGTTTGAAAATTACCATGATCTCCAAATGGCTTCAGTCTTACTACAAAGCATGTTTCAGAGACAGTGGCGGATAGATTTCTTCCAAAGACTTGCTAAAAGCTCCAGTATGTCAGGAAATTTGCGTCTATCAGCTTTGTTTCTGTGTCATGCTGCTCATTGTAAGGCAGAACTAAACCCGGATGAAGCCAAAAAAGATCTAGAAAAAGCAAAGGAATCTCTTGATAAACTTGAAACAAAAGACAAGGAAACCGATGCCGTTTACTCGATGTATTATGCTGCTACAGGCAATGCTGATTTCAGGATTTGCGAAAAATCAGGAAAATTGGAGGATATTGATAATGCCATTGAAGCATACAGCAAGAGTTGTTCTTTGAGAGAAAAAATCTACAAAGATGTAAGCAACACCGACATGTCTTCGGCATATTCTGGCCTAGGGGCGACTCATAACATgaaatcagaattagttgacGGGGAGAACAAGATGAAACAGCTGGACTTTGCTTTGAATTACTTTACCAAGGCAATGAAAACTTTGACGAAAATCAGTAAATCTGGCATGCATAACCAAATGCCTGTTGTCCTGCAGAATATCGGGACTGTTTTCCAATTGAAGGAAAAATATAAGAAAGCGGAGGATTATTTCAAACAGGCattaaaaacagagaaaaaattACACATTGACGGCTTCTACAACACTGCTACTATTATGTGTAATTTAGCTAATGTTTACAGAGAGCTAGGAAAGCATGATAAGGCTTTGGAAATGGCTAGACAAGCAGTTGCTATACGAACTGAGCTGTTTGGCGACCATTTTAAAACAGTACAAACATTATATATTGAGGCAGTAGTGCTTCATGAGCAACAAAGGTTTATTGATGCAATAGATGCATATAAAAGAGCATTTGAAATGAACGAGAAACTGGATTCTTCTACTCGGAAGAACATGCGTGATGATATATACAATTATATGGTTGTTGCTTATGATGAGGCAATCAGCAGAAAGCATACTTACCTGGAGGAAGAGTTGCATCAGTTGGAGTTGAGATTTGAAGGAATTGAGGAATCAGATGTCAGTTCTCTTCATGAGGACGTGGAAGCCTTTTCCGGTAAACTTCAAGTTCCGTATTATTTTATTCACAGTACAGTGAAAATGCTGATGAATGAAAATGGAGGAATGTTTATGTTTGAATATCTTGGAGTCAGTTTGAACGTTCCTAAAGCTGCTTTGAGCTCATCACTTGAAATCGAGTTATCCCGAAAATCACTTCCTAATAATTCCGTAGACCTGGCTTTTGGTGAAACAAGATTGAGTGACGTCATTGTTTTTGGACCAGAAAACACAACGCTTTTGAAACCATGTACATTGACTATTCCATATCACTTGCATGAAAAGCCTTCTATGACAGAAATTGTTGCGAAACATTTTATTCCATCGGAAGAGAAATGGATTAATCTTCCGGAAAATCTTGTAACAGAAACAATTGAAGATCCAGAGATGGAGCGGAAACTAGCTCGAATAACAATTATGAAGCCGGGTCTCTTTGTAATTTGCCTAGTTCTAAAATCTGTCGAGTTTGACGTTGCAGTCGACAAAGAACCCATTGAGCTGAGTCCATTTGGAGAGGACGTTGGAATCAAACTTCGATTTAAACCTGGAACATTTGGGAAAAATCCCGGAAAATGCGTTGCAAAAGTGAATATTTTCACAGATGATGCTAAGGCCGCTCTGAGAAATCTTGGAGTAACGATCAGTCCTATTCTACATATCGATACCCCATCTGGGGTGCCAAAAAAATCCGTTGAAATCCAGCTACCCTTTGATCAAACAGAAACAACTGATGGGATGATGGTTGTATTACAAGGAAATGATAATGGTGATTTTGAAGATATAACTGGTGATTCAAAATACAAGTTACAAGAAAACGGAATCTGCTTCCAAGTTGACCATTTCAGCCTGTTTTTATGGGCCAGTGTACAAGGGAATATTTCAAAGCTTTATGAATACATCAAAACGTATGTTTATGCTGCATTTCACACTGTTTTCCACCTTTATGCTGATTCCAAAAAGATCTTTATTAAAGATGCAGAATTTCTTAGTTGCTGTATTGCTTGCTCTACCCACGACGACATGGAGAGTGAGAAGATGAAATACCTTGATCCAAGTTTCGATCTAATCGCGAAATCAAAGTCACAAAATGGTATATACAACGGAACGCAATTAAGTATTCAAGTTCTAGGAACCATGAAGTGTGATTCGCTGGACCCACTTGAAATTAgCCACCGTCTTTTCCCAAGTATGAGCATGTATTTGATGCCTGCAATGCAGATGgtatgtgccgagatagctcagttgggagagcgtcagactgaagatctaaagctgttatgtgccgagataactcagttgggagagcatcagactgaagatctgaagctgttatgtgccgagatagctcagttgggagagcgtcagactgaagatctgaagCTGTTATGTGctgagatagctcagttgggagagcgtcagactgaagatctgaaggtccctggttcaatccctcgTCGCGGCATCAGTCTGttatgtgccgagatagctcagttgaGAGAGCATCCGACTGAAGAtttgaaggtccctggttcaatccctggtcacGGCATCCAGTGTTTTCTATATCTTGTTGACTTTCCGAGCATCAtcatgtatttaatacctgtgatccagctgctatgtgccgagatagctcagttgggagagcgtcagactgaagatctgaaggtccctggttcaatccctggtcgcggcatctag

Transcript

evm.model.HiC_scaffold_29.1101

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF00791	ZU5	ZU5 domain	Family	Interproscan
PF00004	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051787	Family	Effector and Ciliary Development-Associated Protein	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR000906	Domain	ZU5 domain	Interproscan
IPR003959	Domain	ATPase, AAA-type, core	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45641	TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan