Detailed information of evm.model.HiC_scaffold_29.1150 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_29:8250031...8288729
NR annotation: XP_012555377.1, mothers against decapentaplegic homolog 4 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P97471Mothers against decapentaplegic homolog 4 OS=Mus musculus OX=10090 GN=Smad4 PE=1 SV=2
Q13485Mothers against decapentaplegic homolog 4 OS=Homo sapiens OX=9606 GN=SMAD4 PE=1 SV=1
O70437Mothers against decapentaplegic homolog 4 OS=Rattus norvegicus OX=10116 GN=Smad4 PE=1 SV=1
Gene familySubfamily
Transcription Factors FamilyMH1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03166MH2MH2 domainFamilyInterproscan
PF04103CD20CD20-like familyFamilyInterproscan
PF00567TUDORTudor domainDomainInterproscan
PF03165MH1MH1 domainDomainInterproscan
PF00013KH_1KH domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036612Homologous_superfamilyK Homology domain, type 1 superfamilyInterproscan
IPR003619DomainMAD homology 1, Dwarfin-typeInterproscan
IPR001132DomainSMAD domain, Dwarfin-typeInterproscan
IPR004087DomainK Homology domainInterproscan
IPR013790FamilyDwarfinInterproscan
IPR007237FamilyCD20-like familyInterproscan
IPR013019DomainMAD homology, MH1Interproscan
IPR002999DomainTudor domainInterproscan
IPR036578Homologous_superfamilySMAD MH1 domain superfamilyInterproscan
IPR017855Homologous_superfamilySMAD-like domain superfamilyInterproscan
IPR004088DomainK Homology domain, type 1Interproscan
IPR008984Homologous_superfamilySMAD/FHA domain superfamilyInterproscan
IPR035437Homologous_superfamilySNase-like, OB-fold superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13703SMADInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0007179Biological Processtransforming growth factor beta receptor signaling pathwayInterproscan
GO:0009653Biological Processanatomical structure morphogenesisInterproscan
GO:0030154Biological Processcell differentiationInterproscan
GO:0030509Biological ProcessBMP signaling pathwayInterproscan
GO:0060395Biological ProcessSMAD protein signal transductionInterproscan
GO:0070411Molecular FunctionI-SMAD bindingInterproscan
GO:0071144Cellular Componentheteromeric SMAD protein complexInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0005667Cellular Componenttranscription regulator complexInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan

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