Gene detail

Detailed information of evm.model.HiC_scaffold_29.1322 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_29:10272756...10330562
NR annotation: XP_020896915.1, DNA helicase MCM8 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_29.1322

ATGGACAAGGGCACTCATATGAAAAAGTGCAATTTTTCAAATGACGACATAGCACGCTACTCAAGACAACTAATTCTACCTGAAATGGGTGTTGATGGACAAATTAAATTAAAGGCAGCAAAAGTGCTTTTGATTGGGATGGGTGGCCTTGGATGTCCAGCAGGCCTATATCTTGCAGCTGCTGGCGTAGgcACCCTTGGGCTTCTAGACTATGATGATGTCGATAAAAGTAATCTTCACAGACAGATATTACATAATGAAGAAAATCTAGGGATGCCAAAAGTTTCATCAGCTGCACAATACATTAATAGGTTAAATTCCTCTGTCGAATGTGTTGAGCATCATTTGGCATTAGATAATACATCAGCTCTCGACATTGTGCAAAATTACATATATGATGTTGTTATTGATGCTTCTGATAATGTAGCAACAAGGTATCTTGTAAACGATGCTTGTGTTCTTGCTGGTAAACCGTTGGTATCTGGTAGTGCACTTCGGTTTGAAGGACAGCTTACAGTGTATAATTACAGAGATGGACCGTGTTATCGATGTCTTTATGCAAGACCCCCGCCTGCTGAAACTGTTACTAATTGTTCTGATGGAGGTGTCATTGGCGCTGTAACTGGAATGATTGGATCTCTTCAGGCATTGGAGACCATAAAAATTCTAGTTGGCATTGAACCTGCATACTATAAGAAACTGCTGATGTTTGATGGGCTAGCTGGTGATATACGAATAGTAAAACTCAGAGGAAAGAAACCTGACTGCTCAGTTTGTGGACAGAAACCAAGCATTACTACCTTACAAGATTATGAAGCTTTTTGTGGAGCCTCTGCTACTGATAAGTTCAGCGGAATCTGCATTCGGAGTCATTTTGCATATTTAGTTAGAATATCTGAGGTGACAAGTGAGTCGGCTACTGAGCTCCTTACACCAGGAACCATCTATGGAGCCAGCTGGACTAACATCTTTTCCACACCTCTGAATATCCGATACGGCAATCTTGACATTTTCCCCACTGTAATGAATGCATTTCCCCGAAAGAGGAAAGACCAGACGAAATATGGGAAATGGGCCCGAGCCCGAAATGAGAGATTTGCAACGTCAGTTCCTACACAAGCTACATGTCGAATAAGAAGTAGCCATCATGATAATAACAGCCCCTACAAAAAGTGGAACACCTACCTCCCATTTACAACATACACTGCaggagatgataatgaaaagGCTATTGCAGCATTAAAGGcgtattttgaaagaaaaattaatgaTTTTGATCCAGATGATATTGAGAAAAAGCATGCTGTATTCATTGATTTTGCAGAACTGGTGAATGACACAGACTTGAAAACCGAATTGCCGCAGCTATCATCCGATTTACAAAGTAATCCTGAGCTCACTTTAAAAATTCTGAATTTGGCATTTCATGAGGCTCTAATTGACTGCAGTTTCCGCGAAGAAGCACAAAGTATCCCAATACTTTCTGATATACCATCCATGAACGTGAGATTGTACAATTATGAACCAATTACATACCTGAGAAATCTCAAAGCGAATTATTATGGTAAATTCGTATCTGTACGTGGTACAGTTGTCAGAGTGAGTAATGTGAAACCAATGGTAACCCAAATGGCATTTACTTGTTCTTCTTGCAAAGCTTGTCAGGTCTTGACTTTATCAGATGGACGGTATAGCACTCCTAGCAAGTGTACAACTCAAGAGTGCAGATCACATTCATTCATTCCTAACAGAAGTTCCAAGTTGACGACTACTATTGATAGTCAAATAATCAAGATTCAAGAGATTATGCTTGATGAAAAAAGAGAAGCTGGCAGAATTCCTCGAACTGTTGAGTGTGAACTGTTCTCTGACCTTGTTGACGTTTGTGTACCTGGTGATATGGTTACTGTGAATGGCGTGGTCCGGCTTTCTAATAATGATGACCATTCTTctaagaacaaagaaaaatgcATGTTTTTACTTTACATTCATGCAAACTGTCTGATGAACTTTCGTGAAGCCAAGAGCAACGGCGAAACTGGAAATCAAAATAACGAATTCTCTTTAAAGGAACTTTATGCAATCAGGGAAATTCATTCGGAAAAGAATTTGTTCAAACTTATCGTTGGGTCACTGTGTCCATTAATCTATGGCCACGAGCTTGTAAAAGCTGGATTGGTCCTTGGCTTATTTGGAGGAACACCAAGGTGTTCAGATGACAAAAGTCAGATTCCAATGAGAAGTGACCCACATGTCCTCACTGTTGGAGATCCAGGACTGGGAAAAAGTCAGATGTTACAAGCGGTAGCGAATGCAGCTCCAAGAGGTGTCTTTGTTTGTGGAAATACAACTACTACATCAGGACTTACTGTGACACTGTCTAAGGAATGTGGCTCGGGAGATTATGCCTTAGAAGCTGGAGCACTGGTGTTAGCTGACCAAGGTTGCTGCTGTATTGATGAATTCGACAAGATGGGAAATCAGCATCAAGCTCTGCTGGAAGCCATGgAGCAACAGAACATTAGCATTGCAAAAGCAGGCATTGTTTGCAGtttgcCAGCTCGAACGTCCATAATTGCAGCCGCGAATCCTGTTGCAGGACATTATAACAAAGCAAAGACTATATCTGAAAATCTGAAATTAAACAGTGCCTTACTTTCAAGATTCGACCTGGTGTTTATTCTTCTGGATAAACCCGACGAGCTTCTTGACTGTATCATATCTGAACATGTAATGGCTATGCATTCGGGAAAACAAAGCGCACCTCCTACAAAAGAACACTCCAATGAGAAAATCCCAGAAACTCCTGATCCATCAAAAGAGCAATGGGATGCTGATAAACCCCTATGTGAAAGATTAAAAGTATTAAAAAATGAGAAGTTTGATCCTTTGCCTATTCCCCTTCTTCGAAAGTATATTGCATATGCAAGAAAATATGTTCATCCAAAGCTGTCCGAGGAGGCTGCCAATGTACTTCAGGAGTTCTATCTTACATTAAGGCGACAGTATAGAGGTCCAGAAAGCACCCCGGTTACAACAAGGCAGCTAGAGTCACTAATTAGGCTAACAGAGGCTAGAGCAAAGCTAGAATTGCGTGAAAAAGCTACGCgagaagatgctgaagatgTCATTGAGATAATGAAATTCAGTCTTGTTGATATATACGTTGATGATGTGGGAAATTTGAATTTGGAAAGGTCTTTGCAAGGATCAGGAATGAGCAAACGTAAACAGATTAAAAAATTCATTACAGAGTTAACAAGAATAGCAGATCGAGATTGCAATTCACTCTTCAGTTATGATCAAATGAAACAACTGGCTTTGTGCCATGCCATATCTGATGAACTTAGAAACTGGTCTGCATGA

Transcript

evm.model.HiC_scaffold_29.1322

Protein

Uniprot

Gene family

Uniprot term	Description
I0IUP3	DNA helicase MCM8 OS=Gallus gallus OX=9031 GN=MCM8 PE=1 SV=1
Q0V9Q6	DNA helicase MCM8 OS=Xenopus tropicalis OX=8364 GN=mcm8 PE=2 SV=1
Q9UJA3	DNA helicase MCM8 OS=Homo sapiens OX=9606 GN=MCM8 PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	E1\|ThiF\|ThiF

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00493	MCM	MCM P-loop domain	Domain	Interproscan
PF17855	MCM_lid	MCM AAA-lid domain	Domain	Interproscan
PF00899	ThiF	ThiF family	Domain	Interproscan
PF17207	MCM_OB	MCM OB domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001208	Domain	MCM domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR041562	Domain	MCM, AAA-lid domain	Interproscan
IPR000594	Domain	THIF-type NAD/FAD binding fold	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR031327	Family	Mini-chromosome maintenance protein	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR033762	Domain	MCM OB domain	Interproscan
IPR035985	Homologous_superfamily	Ubiquitin-activating enzyme	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11630	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0032508	Biological Process	DNA duplex unwinding	Interproscan
GO:0003697	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0017116	Molecular Function	single-stranded DNA helicase activity	Interproscan
GO:0042555	Cellular Component	MCM complex	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0008641	Molecular Function	ubiquitin-like modifier activating enzyme activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11996	MOCS3, UBA4; adenylyltransferase and sulfurtransferase	EC:2.7.7.80 EC:2.8.1.11	Ubiquitin system	ko04121	deepkoala